View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14508_low_5 (Length: 402)
Name: NF14508_low_5
Description: NF14508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14508_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 4e-97; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 72 - 267
Target Start/End: Original strand, 31527079 - 31527274
Alignment:
| Q |
72 |
taagtaaaatatccatcaaatgaatctcaaagccaaggtttgatcaactaaaaacaataacatggatataatacttgcgatgtatcgattgatgtctaaa |
171 |
Q |
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| T |
31527079 |
taagtaaaatattcatcaaataaatctcaaagccaaggtttgatcaactaaaaacaataacatggatataatacttgcaatatatcgattgatgtctaaa |
31527178 |
T |
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| Q |
172 |
atattttttaaaagcaataagattgaattggatactttgaaactccctaaccaaaagaaaaagaaagagttggaattatgcaaagtttattattaa |
267 |
Q |
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| T |
31527179 |
atattttttaaaagcaataagattgaattggatactttgaaactccctaaccaaaagaaaaagaaagagttggaattatgcaaagtttattattaa |
31527274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 31523580 - 31523692
Alignment:
| Q |
1 |
aggtccgagtttgtcaagtattatataaacaaaatttagaaatatacagctcaaaaagaaagactacactctaagtaaaatatccatcaaatgaatctca |
100 |
Q |
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| T |
31523580 |
aggtctgagttagtcaagtattatataaacaaaatttagaaatatacagctcaaaaagaaagattacactctaagtaaaatatacttcaaatgaatatca |
31523679 |
T |
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| Q |
101 |
aagccaaggtttg |
113 |
Q |
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| T |
31523680 |
aagccaaggtttg |
31523692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 31526177 - 31526251
Alignment:
| Q |
1 |
aggtccgagtttgtcaagtattatataaacaaaatttagaaatatacagctcaaaaagaaagactacactctaag |
75 |
Q |
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| T |
31526177 |
aggtccgagtttgtcaagtattatataaacaaaatttagaaatatacggcgcaaaaagaaagactacactctaag |
31526251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 325
Target Start/End: Original strand, 31527273 - 31527312
Alignment:
| Q |
286 |
aagataaggggaaaactactcactcattataaagatgagc |
325 |
Q |
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| T |
31527273 |
aagataaggggaaaactactcactcattataaagatgagc |
31527312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 23659636 - 23659574
Alignment:
| Q |
169 |
aaaatattttttaaaagcaataagattgaattggatactttgaaactccctaaccaaaagaaa |
231 |
Q |
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| T |
23659636 |
aaaatatttcttaaacacaataaaattgaattagatactttgaaactccacaacaaaaagaaa |
23659574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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