View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14508_low_8 (Length: 327)

Name: NF14508_low_8
Description: NF14508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14508_low_8
NF14508_low_8
[»] chr5 (1 HSPs)
chr5 (2-309)||(11158947-11159253)
[»] chr4 (1 HSPs)
chr4 (79-306)||(10392379-10392604)
[»] chr2 (3 HSPs)
chr2 (80-309)||(31071520-31071747)
chr2 (163-309)||(43689051-43689196)
chr2 (175-309)||(19517759-19517893)
[»] chr1 (3 HSPs)
chr1 (82-250)||(43944199-43944366)
chr1 (123-281)||(33142994-33143152)
chr1 (199-255)||(22191622-22191678)
[»] chr7 (1 HSPs)
chr7 (124-235)||(4344082-4344193)
[»] chr8 (1 HSPs)
chr8 (182-233)||(26074190-26074241)
[»] scaffold0062 (3 HSPs)
scaffold0062 (203-281)||(17290-17368)
scaffold0062 (203-281)||(27458-27536)
scaffold0062 (203-281)||(37624-37702)


Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 309
Target Start/End: Complemental strand, 11159253 - 11158947
Alignment:
Q  2 ttttaaattgagaataatctactttcatttattttaagaaggtgggggacggtatggatacannnnnnnngaactgatc-gtgggtaggtggagttccgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||        || |||||| || | |||||||||||||      
T  11159253 ttttaaattgagaataatctactttcatttattttaagaaggtgggg-acagtatggatacatttttttgga-ctgatccgtagttaggtggagttccac 11159156  T
Q  101 tggcggtgcggtttagaaatcggtatgatttaagtgttaataaaaattgtttggtggaggaaatgttttcgttgggggtggaggaagggggagagacttg 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  11159155 tggcggtgcggtttaaaaatcggtatgatttaagtgttaataaaaattgtttggtggaggaaatgttcgcgttgggggtggaggaagggggagagacttg 11159056  T
Q  201 gcagtggcgtaggaggttgtgggattgggaggaagacttggttcgggagtgtaggttgctgttgtctcatgttgttttgcacttttcgatttctgaccga 300  Q
    |||| || ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||||| ||    
T  11159055 gcagcggtgtaggaggttgtgggattgggaggaggacttggttcgggagtgtaggttgttgttgtctgatgttgttttgcacgttttgatttctgactga 11158956  T
Q  301 tggaattgg 309  Q
    |||||||||    
T  11158955 tggaattgg 11158947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 79 - 306
Target Start/End: Original strand, 10392379 - 10392604
Alignment:
Q  79 tcgtgggtaggtggagttccgttggcggtgcggtttagaaatcggtatgatttaagtgttaataaaaattgtttggtggaggaaatgttttcgttggggg 178  Q
    |||||||||||||||||  ||||||||||||||||||||     ||||||||||||||||||||||| |||||| |||| |||||||||| |||||||||    
T  10392379 tcgtgggtaggtggagtctcgttggcggtgcggtttagacgcttgtatgatttaagtgttaataaaatttgtttagtgggggaaatgtttgcgttggggg 10392478  T
Q  179 tggaggaagggggagagacttggcagtggcgtaggaggttgtgggattgggaggaagacttggttcgggagtgtaggttgctgttgtctcatgttgtttt 278  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| ||||  |||||||| || || ||||    
T  10392479 tggagga-gggggagaggcttggcagtggcgtaggaggttgtgggattgagaggaggacttggttcggg-gtgtcggttattgttgtctgatattatttt 10392576  T
Q  279 gcacttttcgatttctgaccgatggaat 306  Q
     ||  ||| ||||  |||||||||||||    
T  10392577 acaagttttgattgttgaccgatggaat 10392604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 80 - 309
Target Start/End: Original strand, 31071520 - 31071747
Alignment:
Q  80 cgtgggtaggtggagttccgttggcggtgcggtttagaaatcggtatgatttaagtgttaataaaaattgtttggtggaggaaatgttttcgttgggggt 179  Q
    |||||||||||||||| | ||||||||||| |||||||     ||||||||||||||||||||||||||||||  ||| ||||||||||  |||||||||    
T  31071520 cgtgggtaggtggagtcctgttggcggtgccgtttagacgcttgtatgatttaagtgttaataaaaattgtttaatgggggaaatgtttgtgttgggggt 31071619  T
Q  180 ggaggaagggggagagacttggcagtggcgtaggaggttgtgggattgggaggaagacttggttcgggagtgtaggttgctgttgtctcatgttgttttg 279  Q
    |||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| | |||| | ||||||| || || ||||     
T  31071620 ggagga-gggggagaggcttggaagtggcgtaggaggttgtgggattgggaggaggacttggttcggaagtatcggttaccgttgtctgatattatttta 31071718  T
Q  280 cacttttcgatttctgaccgatggaattgg 309  Q
    ||  |||||| | | |||||||||||||||    
T  31071719 caagtttcgactgc-gaccgatggaattgg 31071747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 309
Target Start/End: Original strand, 43689051 - 43689196
Alignment:
Q  163 atgttttcgttgggggtggaggaagggggagagacttggcagtggcgtaggaggttgtgggattgggaggaagacttggttcgggagtgtaggttgctgt 262  Q
    ||||||||||||||| ||||||| |||||||||||||||  ||||||  ||||||||||||| |||||||| ||  || | ||||||||||||||| |||    
T  43689051 atgttttcgttgggg-tggaggaggggggagagacttggtggtggcggcggaggttgtgggagtgggaggaggagatgttacgggagtgtaggttgttgt 43689149  T
Q  263 tgtctcatgttgttttgcacttttcgatttctgaccgatggaattgg 309  Q
    ||||  |  ||||||||||  |||||||  ||| |||||||||||||    
T  43689150 tgtccgacattgttttgcatgtttcgatcactggccgatggaattgg 43689196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 175 - 309
Target Start/End: Original strand, 19517759 - 19517893
Alignment:
Q  175 ggggtggaggaagggggagagacttggcagtggcgtaggaggttgtgggattgggaggaagacttggttcgggagtgtaggttgctgttgtctcatgttg 274  Q
    ||||||||||| || |  ||| |||||||| || ||||||||||||| ||||||||||| || |||||| |||||||| |||| |||||| |  ||||||    
T  19517759 ggggtggaggagggtgtggaggcttggcagaggtgtaggaggttgtgagattgggaggatgatttggttagggagtgtcggttactgttgacggatgttg 19517858  T
Q  275 ttttgcacttttcgatttctgaccgatggaattgg 309  Q
    ||||  |  |||| ||| |||||||||||||||||    
T  19517859 ttttaaatgtttcaattgctgaccgatggaattgg 19517893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 82 - 250
Target Start/End: Original strand, 43944199 - 43944366
Alignment:
Q  82 tgggtaggtggagttccgttggcggtgcggtttagaaatcggtatgatttaagtgttaataaaaattgtttggtggaggaaatgttttcgttgggggtgg 181  Q
    |||||||||||||| || |||||| | |||||||||   |  ||||| ||||||||||||||||||||| | |||| |||||||||| | || |||||||    
T  43944199 tgggtaggtggagtcccattggcgattcggtttagacgcctatatga-ttaagtgttaataaaaattgtctagtgggggaaatgtttgcattcggggtgg 43944297  T
Q  182 aggaagggggagagacttggcagtggcgtaggaggttgtgggattgggaggaagacttggttcgggagt 250  Q
    |||| || || ||| ||||||||||||||||| ||||||||||||||||||| ||  | ||||||||||    
T  43944298 aggagggtggggaggcttggcagtggcgtaggcggttgtgggattgggaggaggagctagttcgggagt 43944366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 281
Target Start/End: Original strand, 33142994 - 33143152
Alignment:
Q  123 gtatgatttaagtgttaataaaaattgtttggtggaggaaatgttttcgttgggggtggaggaagggggagagacttggcagtggcgtaggaggttgtgg 222  Q
    |||||| |||||||| |||||| |||||  ||||||||| |||  | | |||||   |||||||||||||||  | ||| ||||| | ||| | ||||||    
T  33142994 gtatgacttaagtgtcaataaacattgtacggtggaggagatggctacattgggttgggaggaagggggagatgcgtggaagtggagaaggcgtttgtgg 33143093  T
Q  223 gattgggaggaagacttggttcgggagtgtaggttgctgttgtctcatgttgttttgca 281  Q
     |||||||||| |   ||||| | ||||||||  || |||||||| |||||||||||||    
T  33143094 tattgggaggaggtgatggttggcgagtgtagtctgttgttgtctaatgttgttttgca 33143152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 22191622 - 22191678
Alignment:
Q  199 tggcagtggcgtaggaggttgtgggattgggaggaagacttggttcgggagtgtagg 255  Q
    ||||||||||||||| |||||||||  |||||||| || |||||  |||||||||||    
T  22191622 tggcagtggcgtaggcggttgtgggcatgggaggaggagttggtaggggagtgtagg 22191678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 235
Target Start/End: Complemental strand, 4344193 - 4344082
Alignment:
Q  124 tatgatttaagtgttaataaaaattgtttggtggaggaaatgttttcgttgggggtggaggaagggggagagacttggcagtggcgtaggaggttgtggg 223  Q
    ||||||||||||||  ||||  |||||  ||||||||| |||  |  |||||||  |||||| || || ||| ||||||||||||| ||| |||||||||    
T  4344193 tatgatttaagtgtcgataagcattgtacggtggaggatatgcatgtgttggggtgggaggagggaggtgaggcttggcagtggcgcaggcggttgtggg 4344094  T
Q  224 attgggaggaag 235  Q
    ||||||||||||    
T  4344093 attgggaggaag 4344082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 26074241 - 26074190
Alignment:
Q  182 aggaagggggagagacttggcagtggcgtaggaggttgtgggattgggagga 233  Q
    ||||||| || ||| ||||||||||||| |||||||||||||| ||||||||    
T  26074241 aggaaggtggtgaggcttggcagtggcggaggaggttgtgggactgggagga 26074190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 281
Target Start/End: Original strand, 17290 - 17368
Alignment:
Q  203 agtggcgtaggaggttgtgggattgggaggaagacttggttcgggagtgtaggttgctgttgtctcatgttgttttgca 281  Q
    ||||||||| |||||||| ||||||| |||| |  || ||  |||||||||||||| ||||| || |||||||||||||    
T  17290 agtggcgtatgaggttgtaggattggaaggaggtgttagtgggggagtgtaggttgttgttggctaatgttgttttgca 17368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 281
Target Start/End: Original strand, 27458 - 27536
Alignment:
Q  203 agtggcgtaggaggttgtgggattgggaggaagacttggttcgggagtgtaggttgctgttgtctcatgttgttttgca 281  Q
    ||||||||| |||||||| ||||||| |||| |  || ||  |||||||||||||| ||||| || |||||||||||||    
T  27458 agtggcgtatgaggttgtaggattggaaggaggtgttagtgggggagtgtaggttgttgttggctaatgttgttttgca 27536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 281
Target Start/End: Original strand, 37624 - 37702
Alignment:
Q  203 agtggcgtaggaggttgtgggattgggaggaagacttggttcgggagtgtaggttgctgttgtctcatgttgttttgca 281  Q
    ||||||||| |||||||| ||||||| |||| |  || ||  |||||||||||||| ||||| || |||||||||||||    
T  37624 agtggcgtatgaggttgtaggattggaaggaggtgttagtgggggagtgtaggttgttgttggctaatgttgttttgca 37702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University