View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14509_high_1 (Length: 367)
Name: NF14509_high_1
Description: NF14509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14509_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 145 - 351
Target Start/End: Original strand, 26765260 - 26765466
Alignment:
| Q |
145 |
ttgtgttgggtttgtgatcatgaattagggctcttgtagatcatgctggagtttcagcacaaccggtgcacttgaaggtgctcactttctgtctaccgga |
244 |
Q |
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| T |
26765260 |
ttgtgttgggtttgtgatcatgaattagggctcttgtggatcatgctggagtttcagcacaaccggtgcacttgaaggtgctcactttctgtcgaccgga |
26765359 |
T |
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| Q |
245 |
aaacttgtcagtcttagcgagcaacaacttgttgattgtgatcatgaggttttttcttcgtttcctattttcccttttgtaattaataatatatctgata |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26765360 |
aaacttgtcagtcttagcgagcaacaacttgttgattgtgatcatgaggttttttcttcgtttcctattttcccttttgtaattaataatatatctgata |
26765459 |
T |
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| Q |
345 |
aggaatt |
351 |
Q |
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||||||| |
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| T |
26765460 |
aggaatt |
26765466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 26765117 - 26765190
Alignment:
| Q |
1 |
tcttccgacagataatcttcccaaggattttgattggagagagaaaggagccgttactgccgttaaaaatcagg |
74 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26765117 |
tcttccgacagataatcttcccaaggattttgattggagagagaaaggagccgttactgccgttaaaaatcagg |
26765190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 191 - 288
Target Start/End: Original strand, 27436558 - 27436655
Alignment:
| Q |
191 |
tggagtttcagcacaaccggtgcacttgaaggtgctcactttctgtctaccggaaaacttgtcagtcttagcgagcaacaacttgttgattgtgatca |
288 |
Q |
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| T |
27436558 |
tggagtttcagtacgattggtgcactcgaaggtgctcacttcctctctagcggagaacttgtgagtcttagcgagcaacatcatgttgactgtgatca |
27436655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 191 - 288
Target Start/End: Original strand, 27945050 - 27945147
Alignment:
| Q |
191 |
tggagtttcagcacaaccggtgcacttgaaggtgctcactttctgtctaccggaaaacttgtcagtcttagcgagcaacaacttgttgattgtgatca |
288 |
Q |
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||||||||||| || | |||||||| |||||||||||||| || |||| |||| ||||||| ||||||||||||||||| | |||||| |||||||| |
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| T |
27945050 |
tggagtttcagtacgattggtgcactcgaaggtgctcacttcctctctagcggagaacttgtgagtcttagcgagcaacatcatgttgactgtgatca |
27945147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 191 - 292
Target Start/End: Complemental strand, 27549668 - 27549567
Alignment:
| Q |
191 |
tggagtttcagcacaaccggtgcacttgaaggtgctcactttctgtctaccggaaaacttgtcagtcttagcgagcaacaacttgttgattgtgatcatg |
290 |
Q |
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||||||||||| |||| || ||||| ||||||||| |||| || ||||| ||| |||| || |||||||| || ||||||| ||||||||||||||||| |
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| T |
27549668 |
tggagtttcagtacaattggcgcactcgaaggtgctaacttcctctctactggagaactcgttagtcttagtgatcaacaacatgttgattgtgatcatg |
27549569 |
T |
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| Q |
291 |
ag |
292 |
Q |
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|| |
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| T |
27549568 |
ag |
27549567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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