View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14509_high_2 (Length: 359)
Name: NF14509_high_2
Description: NF14509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14509_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 44670161 - 44670499
Alignment:
| Q |
16 |
atagtgtacatcttaagattcttaacgctaattttagttcttaattttaaaatttatttgaataaatccaacaatttggttttagcaaaagatgctcact |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44670161 |
atagtgtacatcttaagattcataacgctaattttagttcttaattttaaaatttatttgaataaatccaacaaattggttttagcaaaagatgctcact |
44670260 |
T |
|
| Q |
116 |
actatta-tttatttgtttaataacaaaacagaaagtaccattccagatttcaagcagagcccacttttccaatatcaaaacattgcacatacacgtttc |
214 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44670261 |
actattaatttatttgtttaataacaaaacagaaagtaccattccagatttcaagcagagcccacttttccaatatcaaaacattgcacatacacgtttc |
44670360 |
T |
|
| Q |
215 |
catgcttcattttcaattcatcctaaaaattccaaacccaaattcactactcctagtcgcagtaggtgtgatccgacatggagggatacaggtcgggtca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44670361 |
catgcttcattttcaattcatcctaaaaattccaaacccaaattcactactcctagtcgcagtaggtgtgatccgacatggagggatacaggtcgggtca |
44670460 |
T |
|
| Q |
315 |
tccatcctacgacggcaatagaagggtggatgtagtgat |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44670461 |
tccatcctacgacggcaatagaagggtggatgtagtgat |
44670499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University