View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14509_low_2 (Length: 406)
Name: NF14509_low_2
Description: NF14509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14509_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 3650842 - 3650591
Alignment:
| Q |
1 |
aatatctggttaaattcatgctaattgacaagtaaggaacagagtttattgagaacaatcaaacgaattactaatggtgatataaaatgaaaagtatctg |
100 |
Q |
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| T |
3650842 |
aatatctggttaaattcatgctaattgacaagcaaggaacagagtttcttgagaacaatcaaacgaattactaatggtgatataaaatgaaaagtatctg |
3650743 |
T |
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| Q |
101 |
gttaaattgtcgaattaagattttatagtgaatatgttacttgtattctaacaac---tataatatacttccaatattagttccatgttttagaccattc |
197 |
Q |
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| T |
3650742 |
gttaaattgtcgaattaagattttatagtgaatatgttacttgtattctaacaacaagtataatatacttccaatattagttccatgttttagaccattc |
3650643 |
T |
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| Q |
198 |
atgctaattgacaaggaaggaaccctagtctcttgagaacaatcaaactaat |
249 |
Q |
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| T |
3650642 |
atgctaattgacaaggaaggaaccctagtctcttgagaacaattaaactaat |
3650591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 250 - 388
Target Start/End: Complemental strand, 3641796 - 3641658
Alignment:
| Q |
250 |
tactaatagtgatataaaatgaaaagtgtttggttaaatgagtaaaataaaatagtgggttaagagatataaatgagcaaatattcaatttggtttccaa |
349 |
Q |
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| T |
3641796 |
tactagtagtgatataaaatgaaaagtgtttggttaaatgagtaaaataaaatagtgggttaagagatataaatgagtaaatattcaatttggtttccaa |
3641697 |
T |
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| Q |
350 |
agtaccaccactatatcttttatttgcttcagaactata |
388 |
Q |
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| T |
3641696 |
agtaccaccactatatcttttatttgcttcagaactata |
3641658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 116 - 288
Target Start/End: Complemental strand, 3650914 - 3650736
Alignment:
| Q |
116 |
taagattttatagtgaatatgttacttgtattctaacaactataatatacttccaatattagttccatgttttagacc-------attcatgctaattga |
208 |
Q |
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| T |
3650914 |
taagactttttagtgaatatgttaattgtattctaataagtatattatacttccaatattagttccatgtttaatatctggttaaattcatgctaattga |
3650815 |
T |
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| Q |
209 |
caaggaaggaaccctagtctcttgagaacaatcaaactaattactaatagtgatataaaatgaaaagtgtttggttaaat |
288 |
Q |
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| T |
3650814 |
caagcaaggaacag-agtttcttgagaacaatcaaacgaattactaatggtgatataaaatgaaaagtatctggttaaat |
3650736 |
T |
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