View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14509_low_3 (Length: 377)
Name: NF14509_low_3
Description: NF14509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14509_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 11732423 - 11732784
Alignment:
| Q |
1 |
gcagcggtggcactgatgtagacaacaacgacgagaagttacttgaatgtctccaaccacctcccaatttgaaagttctattcattgtagggtacaatgg |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11732423 |
gcagcggtggcgctgatgtagacaacaacgacgagaagttacttgaatgtctccaaccacctcccaatttgaaagttctattcattgtagggtacaatgg |
11732522 |
T |
|
| Q |
101 |
ccgcaccttctctaaatggctcgattcgcttcaatgccttgttaagtttaccttgagtgactgtcctaaatgcaaatttctaccgccaattgatcacctt |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11732523 |
ccgcaccttatctaaatggctcgattcgcttcaatgccttgttaagtttaccttgagtgactgtcctaaatgcaaatttctaccgccaatcgatcacctt |
11732622 |
T |
|
| Q |
201 |
ccaaatctcaaggctctccatcttcggaggttggaatctcttgaattcattgcagaaaagagcagtgaacctaaagtagattcctcttcctctaaacaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11732623 |
ccaaatctcaaggctctccatcttcggaggttggaatctcttgaattcattgcagaaaagagcagtgaacctaaagtagattcctcttcctctaaacaag |
11732722 |
T |
|
| Q |
301 |
aattctttccagccttgaaggagcttacactttcggattgtcctaaactcgaaagttggtgg |
362 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11732723 |
aattctttccagccttgaaggagcttacaatttcggattgtcctaaactcgaaagttggtgg |
11732784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 42 - 235
Target Start/End: Original strand, 11828660 - 11828853
Alignment:
| Q |
42 |
cttgaatgtctccaaccacctcccaatttgaaagttctattcattgtagggtacaatggccgcaccttctctaaatggctcgattcgcttcaatgccttg |
141 |
Q |
| |
|
||||| |||||||| |||| ||| ||| || |||| ||||| |||| |||||||| || | ||| || ||||| ||||||| ||| ||||||||||||| |
|
|
| T |
11828660 |
cttgattgtctccagccacatccaaatctgcaagtgctattagttgtcgggtacaacggtcacacattgtctaactggctcgcttcacttcaatgccttg |
11828759 |
T |
|
| Q |
142 |
ttaagtttaccttgagtgactgtcctaaatgcaaatttctaccgccaattgatcaccttccaaatctcaaggctctccatcttcggaggttgga |
235 |
Q |
| |
|
||||||||||||||| ||||||||| |||||| ||||||| || ||||| ||| | |||||| ||||||||| |||||| |||||||| ||||| |
|
|
| T |
11828760 |
ttaagtttaccttgaatgactgtcccaaatgcgaatttctcccaccaatggatgagcttccacatctcaaggttctccaacttcggagattgga |
11828853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 79 - 259
Target Start/End: Original strand, 12039597 - 12039777
Alignment:
| Q |
79 |
tattcattgtagggtacaatggccgcaccttctctaaatggctcgattcgcttcaatgccttgttaagtttaccttgagtgactgtcctaaatgcaaatt |
178 |
Q |
| |
|
|||||||||| ||||||||||| | |||||| ||| | ||| ||| ||| ||||| || ||||||||||||||||||| |||||| || |||||| |||| |
|
|
| T |
12039597 |
tattcattgtggggtacaatggtcacaccttgtctgactggttcggttcacttcattgtcttgttaagtttaccttgaatgactgcccaaaatgcgaatt |
12039696 |
T |
|
| Q |
179 |
tctaccgccaattgatcaccttccaaatctcaaggctctccatcttcggaggttggaatctcttgaattcattgcagaaaa |
259 |
Q |
| |
|
||| |||||||| ||| | |||||| ||||||||| |||||| ||||| |||||||| || || ||||||||||| |||| |
|
|
| T |
12039697 |
tctcccgccaatggatgagcttccacatctcaaggttctccaacttcgaaggttggactcactgaaattcattgcaaaaaa |
12039777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 36 - 259
Target Start/End: Complemental strand, 11901747 - 11901524
Alignment:
| Q |
36 |
aagttacttgaatgtctccaaccacctcccaatttgaaagttctattcattgtagggtacaatggccgcaccttctctaaatggctcgattcgcttcaat |
135 |
Q |
| |
|
||||| ||||| ||||| | |||| ||| ||||||| || ||||||||||| ||||||||| | | |||||| ||||| |||||| |||| | || | |
|
|
| T |
11901747 |
aagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatcgtcacaccttgtctaactggctccattccatccagt |
11901648 |
T |
|
| Q |
136 |
gccttgttaagtttaccttgagtgactgtcctaaatgcaaatttctaccgccaattgatcaccttccaaatctcaaggctctccatcttcggaggttgga |
235 |
Q |
| |
|
| ||||||||||||||||||| |||||||| |||||| | ||||| || ||||| ||||| |||||| ||||||||| |||||| ||||||| |||| |
|
|
| T |
11901647 |
gtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggttctccaaattcggagactgga |
11901548 |
T |
|
| Q |
236 |
atctcttgaattcattgcagaaaa |
259 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
11901547 |
ctctctgaaattcattgcagaaaa |
11901524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 85 - 256
Target Start/End: Original strand, 11860835 - 11861006
Alignment:
| Q |
85 |
ttgtagggtacaatggccgcaccttctctaaatggctcgattcgcttcaatgccttgttaagtttaccttgagtgactgtcctaaatgcaaatttctacc |
184 |
Q |
| |
|
|||| |||||| |||||| || || ||||| ||||||| ||| ||||||| ||||| ||| |||||||||| |||||||| || ||||||||||| || |
|
|
| T |
11860835 |
ttgtcgggtaccatggccacatgttgtctaattggctcgcttcacttcaattccttggtaaatttaccttgaacgactgtcccaattgcaaatttctccc |
11860934 |
T |
|
| Q |
185 |
gccaattgatcaccttccaaatctcaaggctctccatcttcggaggttggaatctcttgaattcattgcaga |
256 |
Q |
| |
|
||||| ||||| |||||| ||||||||| |||||| |||||||| ||||| ||| | ||||||||||||| |
|
|
| T |
11860935 |
accaatggatcagcttccacatctcaaggttctccaacttcggagattggactctttgaaattcattgcaga |
11861006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 11901477 - 11901421
Alignment:
| Q |
306 |
tttccagccttgaaggagcttacactttcggattgtcctaaactcgaaagttggtgg |
362 |
Q |
| |
|
|||||| |||||||||| |||||| |||||||||||||||| || ||||||||||| |
|
|
| T |
11901477 |
tttccatccttgaaggaacttacaatttcggattgtcctaatctgaaaagttggtgg |
11901421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University