View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14509_low_8 (Length: 249)
Name: NF14509_low_8
Description: NF14509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14509_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 24595339 - 24595113
Alignment:
| Q |
1 |
acaaagaagttatttgcttttcattcagcccttttgtttgtctttggcccctaactatcttgcatgcctgggacaagcaagattcacatgaaatctcagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
24595339 |
acaaagaagttatttgcttttcattcagtccttttgtttgtctttggcccctaactatcttgcatgcctgggacaag----attcacatgaaatctcaat |
24595244 |
T |
|
| Q |
101 |
gtaagaccataatgaattaaacagaatgatgtgatcaaaatcaaaagcatagcttacctccataggcaaatagttcaacttcctttgacttcctacttga |
200 |
Q |
| |
|
| ||||||||||| || ||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24595243 |
ggaagaccataataaaataagaagaatgatgtgattaaaatcaaaagcatagcttacctccatgggcaaatagttcaacttcctttgacttcctacttga |
24595144 |
T |
|
| Q |
201 |
aggcaaggtaaatgagaatatttgatcgtat |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
24595143 |
aggcaaggtaaatgagaatatttgatcgtat |
24595113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 24618775 - 24619001
Alignment:
| Q |
1 |
acaaagaagttatttgcttttcattcagcccttttgtttgtctttggcccctaactatcttgcatgcctgggacaagcaagattcacatgaaatctcagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
24618775 |
acaaagaagttatttgcttttcattcagtccttttgtttgtctttggcccctaactatcttgcatgcctgggacaag----attcacatgaaatctcaat |
24618870 |
T |
|
| Q |
101 |
gtaagaccataatgaattaaacagaatgatgtgatcaaaatcaaaagcatagcttacctccataggcaaatagttcaacttcctttgacttcctacttga |
200 |
Q |
| |
|
| ||||||||||| || ||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24618871 |
ggaagaccataataaaataagaagaatgatgtgattaaaatcaaaagcatagcttacctccatgggcaaatagttcaacttcctttgacttcctacttga |
24618970 |
T |
|
| Q |
201 |
aggcaaggtaaatgagaatatttgatcgtat |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
24618971 |
aggcaaggtaaatgagaatatttgatcgtat |
24619001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 55 - 231
Target Start/End: Original strand, 24619977 - 24620149
Alignment:
| Q |
55 |
ctatcttgcatgcctgggacaagcaagattcacatgaaatctcagtgtaagaccataatgaattaaacagaatgatgtgatcaaaatcaaaagcatagct |
154 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| || ||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
24619977 |
ctatcttgcatgcctgggacaag----attcacatgaaatctcaatggaagaccataataaaataagaagaatgatgtgattaaaatcaaaagcatagct |
24620072 |
T |
|
| Q |
155 |
tacctccataggcaaatagttcaacttcctttgacttcctacttgaaggcaaggtaaatgagaatatttgatcgtat |
231 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24620073 |
tacctccatgggcaaatagttcaacttcctttgacttcctacttgaaggcaaggtaaatgagaatatttgatcgtat |
24620149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 46528614 - 46528549
Alignment:
| Q |
151 |
agcttacctccataggcaaatagttcaacttcctttgacttcctacttgaaggcaaggtaaatgag |
216 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
46528614 |
agcttacctccataggcaaatagttcaccttcttttgacttcctacttgaaggcaaggtaaatgag |
46528549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 46528755 - 46528683
Alignment:
| Q |
5 |
agaagttatttgcttttcattcagcccttttgtttgtctttggcccctaactatcttgcatgcctgggacaag |
77 |
Q |
| |
|
||||||||| ||||| ||| | ||||||||||| | ||| || || | ||||||||||||||||||| ||||| |
|
|
| T |
46528755 |
agaagttatctgcttctcactaagcccttttgtatatctctgtccaccaactatcttgcatgcctggtacaag |
46528683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University