View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1450_high_1 (Length: 593)
Name: NF1450_high_1
Description: NF1450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1450_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 108; Significance: 6e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 20 - 429
Target Start/End: Original strand, 38172615 - 38173026
Alignment:
| Q |
20 |
gagcttaatttcttaccattttgcagggcatggcctaagattttgtagtgtgcacaatacaagggttactaatcatatttgatagcaacagggaaggcat |
119 |
Q |
| |
|
||||||| |||||||| | |||||| || ||| ||||| ||||| ||||||||||||||| ||||| || ||||||| ||||||| ||||||||||| |
|
|
| T |
38172615 |
gagcttactttcttacaactttgcaaggtatgacctaacattttacagtgtgcacaatacatgggtttcttctcatattcaatagcaatagggaaggcat |
38172714 |
T |
|
| Q |
120 |
gcccctccctttccacaagaacataa-aaaacagtcttccagacatgtccacatccactaacaccatatcgtacaagacaaacaccttagcaagagtaac |
218 |
Q |
| |
|
||||||||||||||| |||||| || ||||| |||||||||||| |||||||||||||||||| || | |||||| ||||||| ||| | ||| | |
|
|
| T |
38172715 |
acccctccctttccactagaacagaatcaaacaatcttccagacatatccacatccactaacaccctaacttacaagtcaaacactctagacaaagtcgc |
38172814 |
T |
|
| Q |
219 |
ctcatctatagtta-ggggtacatatacctaaagctatctcaaacaacgtcttatgtctccaatactcttgagagaggtgcataaattggacctaaactt |
317 |
Q |
| |
|
||| ||||| || | ||||||| |||||| |||||||||| ||||||||||| | |||||||||||||||| ||| ||||| || | ||| | | || |
|
|
| T |
38172815 |
ctcgtctatggtaagggggtaccaatacctgaagctatctcgaacaacgtcttcttcctccaatactcttgagggagatgcatcaaccgaacccagattt |
38172914 |
T |
|
| Q |
318 |
gagggtgagtcagtacctgatgttgcggggtgaagtcctttgtccagtagtagaacctcgaaataccaagtctcagattaactgctccaagagccaaaat |
417 |
Q |
| |
|
||| |||| ||||||||||||| || |||||||||| ||||| ||||||| ||| | |||||| ||| |||||||||||||||||||||||| |
|
|
| T |
38172915 |
gagcaggagtttgtacctgatgttgtggcatgaagtccttcgtccaacagtagaatctcagagcgccaagtttcaaattaactgctccaagagccaaaat |
38173014 |
T |
|
| Q |
418 |
cttgcacatatc |
429 |
Q |
| |
|
||||| |||||| |
|
|
| T |
38173015 |
cttgcgcatatc |
38173026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 6e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 27184763 - 27184645
Alignment:
| Q |
13 |
attcttggagcttaatttcttaccattttgcagggcatggcctaagattttgtagtgtgcacaatacaagggttactaatcatatttgatagcaacaggg |
112 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
27184763 |
attctttgagcttaatttcttaccattttgcagggcatggcctaagattttgtagtgtgcacaatacaacggttactaatcatatttgatagcaacaagg |
27184664 |
T |
|
| Q |
113 |
aaggcatgcccctcccttt |
131 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
27184663 |
aaggcatgtccctcccttt |
27184645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 490 - 576
Target Start/End: Complemental strand, 27184644 - 27184558
Alignment:
| Q |
490 |
ttttaggcttggccataaatcactcaacttgagtttgagagatttggttgtcaatggtgaatcccctctgtgtaatatcaacctccc |
576 |
Q |
| |
|
||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
27184644 |
ttttaggcttggcaagaaatcattcaacttgagtttgagagatttggttgtcaatggtgaatcccctttgtgtaatgtcaacctccc |
27184558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University