View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1450_high_10 (Length: 391)
Name: NF1450_high_10
Description: NF1450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1450_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 28 - 374
Target Start/End: Original strand, 24946600 - 24946952
Alignment:
| Q |
28 |
tttcaaatcagaacattcaattccaattcatattcagataaccactgaaaagactgtagtccaagaaattcacgattaatgaattttgaatacactgaca |
127 |
Q |
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| T |
24946600 |
tttcaaatcaggacatccaattccgattaatattcagataaccactgaaaagactgtagtccaagaaattcacgattaatgaattttgaatacactgaca |
24946699 |
T |
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| Q |
128 |
aagacagaaaccaggg-tttgaaaaaagttctgatgggaatagggtcattcgaatatggatgaaaagtcaaattaggaaaaaagaccaaaggtcgataac |
226 |
Q |
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| T |
24946700 |
gagacagaaaccagggttttgaaacaagttatgatgggaatagggccattcaaatatgaatgaaaagtcaaattaggaaaaaagaccaaaggtcgattac |
24946799 |
T |
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| Q |
227 |
tatcaagtgttttaatatagtctattcg--aaaaaatctttcaaacatgacatcttaaattttgtacattttggtttctgattcttatctttattgacat |
324 |
Q |
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|| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24946800 |
taacaagtgttttaatatagtctatttgaaaaaaaatctttcaaacatgacatcttaaattttgtacattttggtttctgattcttatctttattgacat |
24946899 |
T |
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| Q |
325 |
gcccagtttgcacaaattacaaacttccccag---gaagtaaacctatatcat |
374 |
Q |
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|||| ||||| || |||||||| || || ||| |||||||||||||||||| |
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| T |
24946900 |
gccctgtttgtactaattacaatctacctcaggaagaagtaaacctatatcat |
24946952 |
T |
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