View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1450_high_11 (Length: 355)
Name: NF1450_high_11
Description: NF1450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1450_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 8570041 - 8570381
Alignment:
| Q |
1 |
tacttttactctgtattgtgtggtagtaacaaataataataaaatttgggaagattataaatggaatataatatattgtttctgtttgcttatgagaaag |
100 |
Q |
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| T |
8570041 |
tacttttactctgtattgtgtggtggtaacaaataataataaaatttgggaagattataaatggaatataatatattgtttctgtttgcttatgagaaag |
8570140 |
T |
|
| Q |
101 |
aatgtgacctcgagtaggggtcatttatagttcaacatcaataattaatgaaagcaatcgaacaataaaagaagaagcagacaaggtagctgcttttttg |
200 |
Q |
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| T |
8570141 |
aatgtgacctcgagtaggggtcatttatagttcaacatcaataattaatgaaagcaatcgaacaataaaagaagaagcagacaaggtagctgcttttttg |
8570240 |
T |
|
| Q |
201 |
atcatattcttctaataaaggctaattaagtaagtattatttgattcatgtggtagctaagtaagtcatcaaaggggtcgagtatgtcttccagttgccc |
300 |
Q |
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| T |
8570241 |
atcatattcttctaataaaggctaattaagtaagtaata-ttgattcatgtggtagctaagtaagtcatcaaaggggtcgagtatgtcttccagttgccc |
8570339 |
T |
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| Q |
301 |
taccacaaagtaatgcattcttaggaatagggtattcatctc |
342 |
Q |
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| T |
8570340 |
taccacaaagtaatgcattcttaggaatagggtattcatctc |
8570381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 331
Target Start/End: Original strand, 53748445 - 53748507
Alignment:
| Q |
269 |
tcaaaggggtcgagtatgtcttccagttgccctaccacaaagtaatgcattcttaggaatagg |
331 |
Q |
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| T |
53748445 |
tcaaagggggcgggtatgtctcccacttgccctaccacaaagacgtgcattctttggaatagg |
53748507 |
T |
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