View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1450_high_12 (Length: 337)
Name: NF1450_high_12
Description: NF1450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1450_high_12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 5757950 - 5758287
Alignment:
| Q |
1 |
tactttcaaagtcagcatggatgtgcttgaactgggctacataaaatcagatcaagaagaatatctaatactatattaatttgcactatatagcttaaat |
100 |
Q |
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| T |
5757950 |
tactttcaaagtcagcatggatgtgcttgaactgggctacataaaatcagatcaagaagaatatctaatactatattaatttgcactatatagcttaaat |
5758049 |
T |
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| Q |
101 |
cacaaagagatagctgagcactaaacatggtcttaggatcatgaacctgttcatgtatctcacctttcacaatgttagtttcattttgttttcattttct |
200 |
Q |
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| T |
5758050 |
cacaaagagatagctgagcactaaacatggtcttaggatcatgaacctgttcatgtatctcacctttcacaatgttagtttcattttgttttcattttct |
5758149 |
T |
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| Q |
201 |
ctgtaatatgcaagagggagtaaatc-nnnnnnngtgaaaatcactttctagattataattactataaaatcaaaataaattctcgatctaatagatata |
299 |
Q |
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| T |
5758150 |
ctgtaatatgcaagagggagtaaatcttttttttgtgaaaatcactttctagattataattactataaaatcaaaataaattctcgatctaatagatata |
5758249 |
T |
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| Q |
300 |
ttgccaaaccattaacaaaggccaaaagataattcttc |
337 |
Q |
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| T |
5758250 |
ttgccaaaccattaacaaaggccaaaagataattcttc |
5758287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 11357050 - 11357110
Alignment:
| Q |
6 |
tcaaagtcagcatggatgtgcttgaactgggctacataaaatcagatcaagaagaatatct |
66 |
Q |
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| T |
11357050 |
tcaaaatcaacatggatgtgcctgaactaggttaaataaaattagatcaagaataatatct |
11357110 |
T |
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