View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1450_high_19 (Length: 278)
Name: NF1450_high_19
Description: NF1450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1450_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 47544515 - 47544743
Alignment:
| Q |
14 |
aatataacaattctgctgttgagaacagaatattaaacgctgattttgaaacaataaaagcgaaggtaagtccttgatttaactactttactagtaaaac |
113 |
Q |
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| T |
47544515 |
aatataacaattctgctgttgagaacagaatattaaacgctgattttgaaacaataaaagcgaaggtaagtccttgatttaactactttactagtaaaac |
47544614 |
T |
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| Q |
114 |
ttgttatagaaacctactacttggatcaatactctctgcaaaccgaaatgccttaagcttacacagttagaacatcggtgactacttagattaagttcgg |
213 |
Q |
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| T |
47544615 |
ttgttatagaaacctactacttggatcaatactctctccaaaccggaatgccttaagcttacgcagtcagaacatcggagactacttagattaagtttgg |
47544714 |
T |
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| Q |
214 |
atgatcgagattcaacctcggtgcattga |
242 |
Q |
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| T |
47544715 |
atgatcgagattcaacctcggtgcattga |
47544743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 47528411 - 47528628
Alignment:
| Q |
19 |
aacaattctgctgttgagaacagaatattaaacgctgattttgaaacaataaaagcgaaggtaagtccttgatttaactactttactagtaaaacttgtt |
118 |
Q |
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||||||||||||||||| |||||||||||||| |||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47528411 |
aacaattctgctgttgacaacagaatattaaaagctgatgttgaaacattaagagcgaaggtaagtccttgatttaactactttactagtaaaactggtt |
47528510 |
T |
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| Q |
119 |
atagaaacctactacttggatcaatactctctgcaaaccgaaatgccttaagcttacacagttagaacatcggtgactacttagattaagttcggatgat |
218 |
Q |
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| T |
47528511 |
atagaagcctactacttggatcaaaattctctgcaatttg-aatgccttgagtttacgcagtcagcacattggtgactacttagattaagatcggatgct |
47528609 |
T |
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| Q |
219 |
cgagattcaacctcggtgc |
237 |
Q |
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| T |
47528610 |
tgagattcaacctcggtgc |
47528628 |
T |
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