View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1450_high_2 (Length: 558)
Name: NF1450_high_2
Description: NF1450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1450_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 500; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 16 - 551
Target Start/End: Complemental strand, 10284353 - 10283818
Alignment:
| Q |
16 |
caatcatatgatgaaagcacttcaaattccaaactgcagtccagatgatgtaacattcagtcctgattttcaacaaacactctactgccaccttttatgt |
115 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10284353 |
caatcatatgatggaagcacttcaaattccaaactgcagtccagatgatgtaacattcagtcctgattttcaacaaacactctactgccacctcttatgt |
10284254 |
T |
|
| Q |
116 |
ggactacttttcagagaagaagttcaattggtttcgtccacatttgcacatagcattgtgaatgctttcagaacatttgaacaagtttgggaagaacttg |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10284253 |
ggactacttttcagagaagaagttcaattggtttcgtccacatttgcacatagcattgtgaatgctttcagaacatttgaacaaatttgggaagaacttg |
10284154 |
T |
|
| Q |
216 |
ttactgatatcaaagaaggtgttcttagcagtagaatcacacatccatccattagaactgctatgtcaaaattgctgaaaccaaatcctgaactagctaa |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10284153 |
ttactgatatcaaagaaggtgttcttagcagtagaatcacacatccatccattagaactgctatgtcaaaattgctgaaaccaaatcctgaactagctaa |
10284054 |
T |
|
| Q |
316 |
cttgatccacaagaaatgctcaggattaagcaattggtatggattgataccagagctttttccaaatgctaagtatgttctagggatcatgacaggtgca |
415 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10284053 |
cttgatccacaagaaatgctcaggattaagcaactggtatggattgataccagagctttttccaaatgctaagtatgttctagggatcatgacaggtgca |
10283954 |
T |
|
| Q |
416 |
atggaaccttatatgaaaaagctgagacattatgcagtagaagttcctttgttaacttctgattatggtgcttctgaaggttggattagtttaaatttga |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
10283953 |
atggaaccttatatgaaaaagctgagacattatgcaggagaagttcctttgttaacttctgattatggtgcttctgaaggttggattggttcaaatttga |
10283854 |
T |
|
| Q |
516 |
atcctaaagtggctcctgagtttgctgcctatgcta |
551 |
Q |
| |
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|||||||||||||||||||||||||| | ||||||| |
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| T |
10283853 |
atcctaaagtggctcctgagtttgctacttatgcta |
10283818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 60 - 541
Target Start/End: Complemental strand, 10243485 - 10243004
Alignment:
| Q |
60 |
atgatgtaacattcagtcctgattttcaacaaacactctactgccaccttttatgtggactacttttcagagaagaagttcaattggtttcgtccacatt |
159 |
Q |
| |
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||||||| | |||||||||| ||||||| ||| |||||||||||||||| ||||||||||| |||| |||||||||| ||||||| |||| || ||||| |
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|
| T |
10243485 |
atgatgtgatattcagtcctaattttcaccaatcactctactgccacctcttatgtggactgctttgcagagaagaaattcaattaatttcatcaacatt |
10243386 |
T |
|
| Q |
160 |
tgcacatagcattgtgaatgctttcagaacatttgaacaagtttgggaagaacttgttactgatatcaaagaaggtgttcttagcagtagaatcacacat |
259 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10243385 |
tgcacatagcattgtctatgctttcagaacctttgaacaagtttgggaagaacttattactgacatcaaagaaggtgttcttagcagtagaatcacacat |
10243286 |
T |
|
| Q |
260 |
ccatccattagaactgctatgtcaaaattgctgaaaccaaatcctgaactagctaacttgatccacaagaaatgctcaggattaagcaattggtatggat |
359 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
10243285 |
ccatccattagaactgcaatgtcaaaactgctgaaaccaaatcctgaactagctaacttgatccacaagaaatgcataggattgagcaattggtatggac |
10243186 |
T |
|
| Q |
360 |
tgataccagagctttttccaaatgctaagtatgttctagggatcatgacaggtgcaatggaaccttatatgaaaaagctgagacattatgcagtagaagt |
459 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||| |||||||||||| |||||||||||||||||| |||||||| ||||||| ||||||| ||| || |
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|
| T |
10243185 |
tgataccagagctttttcctaatgttaagtatgttcaagggatcatgactggtgcaatggaaccttatgtgaaaaagttgagacactatgcaggagaggt |
10243086 |
T |
|
| Q |
460 |
tcctttgttaacttctgattatggtgcttctgaaggttggattagtttaaatttgaatcctaaagtggctcctgagtttgct |
541 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||||||||||||| || |||| ||||||||||||||||||||||||||||| |
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|
| T |
10243085 |
tcctttgttgacttctgagtatggctcttctgaaggttggattgcttcaaatgtgaatcctaaagtggctcctgagtttgct |
10243004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 52 - 541
Target Start/End: Complemental strand, 10273075 - 10272586
Alignment:
| Q |
52 |
cagtccagatgatgtaacattcagtcctgattttcaacaaacactctactgccaccttttatgtggactacttttcagagaagaagttcaattggtttcg |
151 |
Q |
| |
|
|||||||||||| |||| ||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| || |||| |
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|
| T |
10273075 |
cagtccagatgaagtaatatttagtcctgattttcagcaaacactctactgccacctcttatgtggactacttttcagagaagaagttagtttaatttca |
10272976 |
T |
|
| Q |
152 |
tccacatttgcacatagcattgtgaatgctttcagaacatttgaacaagtttgggaagaacttgttactgatatcaaagaaggtgttcttagcagtagaa |
251 |
Q |
| |
|
| |||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
10272975 |
gcaccatttgcacacagccttgtgaatgctttcagaacatttgaacaagtttgggaggaacttgttactgatatcagagaaggtgttcttagcagtagaa |
10272876 |
T |
|
| Q |
252 |
tcacacatccatccattagaactgctatgtcaaaattgctgaaaccaaatcctgaactagctaacttgatccacaagaaatgctcaggattaagcaattg |
351 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
10272875 |
tcacacatccattcattagaactgctatgtctaaactgctgacaccaaatcctgaactagctaacttgatccacaagaaatgcataggattgagcaattg |
10272776 |
T |
|
| Q |
352 |
gtatggattgataccagagctttttccaaatgctaagtatgttctagggatcatgacaggtgcaatggaaccttatatgaaaaagctgagacattatgca |
451 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||||||| |||||||||||||||||||| ||||||||| ||| |||||||| ||||||| |||||| |
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|
| T |
10272775 |
gtatggattgataccggagcttttccctaatgctaagtatcttctagggatcatgacaggttcaatggaacattacttgaaaaagttgagacactatgca |
10272676 |
T |
|
| Q |
452 |
gtagaagttcctttgttaacttctgattatggtgcttctgaaggttggattagtttaaatttgaatcctaaagtggctcctgagtttgct |
541 |
Q |
| |
|
| ||| ||||||||| | |||||||| ||||| ||||||||||||||||| || |||| ||||||||||||||||||||||||||||| |
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|
| T |
10272675 |
ggagaggttcctttggtgacttctgagtatggctcttctgaaggttggattgcttcaaatgtgaatcctaaagtggctcctgagtttgct |
10272586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 52 - 541
Target Start/End: Complemental strand, 10265378 - 10264889
Alignment:
| Q |
52 |
cagtccagatgatgtaacattcagtcctgattttcaacaaacactctactgccaccttttatgtggactacttttcagagaagaagttcaattggtttcg |
151 |
Q |
| |
|
|||||||||||| |||| ||| ||||| |||||||| ||| |||||||||| ||||| |||||||||||| ||||||||||||||||| || |||| |
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| T |
10265378 |
cagtccagatgaagtaatatttagtccagattttcaccaatcactctactgtcacctcttatgtggactatttttcagagaagaagttagtttaatttca |
10265279 |
T |
|
| Q |
152 |
tccacatttgcacatagcattgtgaatgctttcagaacatttgaacaagtttgggaagaacttgttactgatatcaaagaaggtgttcttagcagtagaa |
251 |
Q |
| |
|
|| ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||| ||| |
|
|
| T |
10265278 |
tcaacatttgcacacagccttgtgtatgctttcagaacatttgaacaagtttgggaggaacttgtttttgatatcagagaaggtgttcttagcaataggg |
10265179 |
T |
|
| Q |
252 |
tcacacatccatccattagaactgctatgtcaaaattgctgaaaccaaatcctgaactagctaacttgatccacaagaaatgctcaggattaagcaattg |
351 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||| |
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|
| T |
10265178 |
taacacatccatccattagaactgctatgtctaaactgctgaaaccaaatcctgaactagctaacttgatccacaagaaatgcataggattgagcgattg |
10265079 |
T |
|
| Q |
352 |
gtatggattgataccagagctttttccaaatgctaagtatgttctagggatcatgacaggtgcaatggaaccttatatgaaaaagctgagacattatgca |
451 |
Q |
| |
|
|||||||||||||||||| |||||||| |||| ||||||||||||||| |||||||||||| ||||||||| ||| |||||||| ||||||| |||||| |
|
|
| T |
10265078 |
gtatggattgataccagaactttttcctaatgttaagtatgttctaggaatcatgacaggttcaatggaacattacttgaaaaagttgagacactatgca |
10264979 |
T |
|
| Q |
452 |
gtagaagttcctttgttaacttctgattatggtgcttctgaaggttggattagtttaaatttgaatcctaaagtggctcctgagtttgct |
541 |
Q |
| |
|
| ||| ||||||||||| |||||||| |||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| |
|
|
| T |
10264978 |
ggagaggttcctttgttgacttctgaatatggtgcttctgaaggttggattgcttcaaatgtgaatcctaaagtggctcctgagtttgct |
10264889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 390
Target Start/End: Complemental strand, 13979996 - 13979838
Alignment:
| Q |
230 |
gaaggtgttcttagcagtagaatcacacatccatccattagaactgctatgtcaaaattgctgaaaccaaatcctgaactagctaacttgatccacaaga |
329 |
Q |
| |
|
||||| |||||||| |||||| ||||| ||||||| ||| ||| ||||||| |||||||| ||||||||||| ||| ||||| || | |||||||| | |
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|
| T |
13979996 |
gaaggagttcttagtagtagagtcacagatccatcgattcgaat--ctatgtctaaattgctcaaaccaaatccagaattagctgacataatccacaaaa |
13979899 |
T |
|
| Q |
330 |
aatgctcaggattaagcaattggtatggattgataccagagctttttccaaatgctaagta |
390 |
Q |
| |
|
|||| ||| || | ||||||||||| ||| |||||||| | ||||| ||||| ||||| |
|
|
| T |
13979898 |
aatgtctagggttgaataattggtatggtttgttaccagagttgtttcctaatgcgaagta |
13979838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 110 - 390
Target Start/End: Original strand, 48367493 - 48367773
Alignment:
| Q |
110 |
ttatgtggactacttttcagagaagaagttcaattggtttcgtccacatttgcacatagcattgtgaatgctttcagaacatttgaacaagtttgggaag |
209 |
Q |
| |
|
||||| |||||| ||||| | || || ||||||||||| | || |||||||||||||||||||| |||| |||||| | ||||||||||||||||||| |
|
|
| T |
48367493 |
ttatgcggactaattttccgcgaggaggttcaattggtatgttcaacatttgcacatagcattgttcatgccttcagatcctttgaacaagtttgggaag |
48367592 |
T |
|
| Q |
210 |
aacttgttactgatatcaaagaaggtgttcttagcagtagaatcacacatccatccattagaactgctatgtcaaaattgctgaaaccaaatcctgaact |
309 |
Q |
| |
|
| ||| || |||||| | ||||||||||||||| || ||| |||| ||| |||||| ||||||||||||| |||||||| ||||||||||| ||| | |
|
|
| T |
48367593 |
agctttgtaatgatataagagaaggtgttcttagtagcagagtcacggttccctccattcgaactgctatgtctaaattgctcaaaccaaatccagaatt |
48367692 |
T |
|
| Q |
310 |
agctaacttgatccacaagaaatgctcaggattaagcaattggtatggattgataccagagctttttccaaatgctaagta |
390 |
Q |
| |
|
||| ||| | |||||||| | ||| |||||||||||| |||||||| |||||||| ||||||||||| ||||| ||||| |
|
|
| T |
48367693 |
agcgaacataatccacaaaagatgtataggattaagcaactggtatggtttgataccggagctttttccgaatgcaaagta |
48367773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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