View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1450_high_3 (Length: 515)
Name: NF1450_high_3
Description: NF1450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1450_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 38307953 - 38308450
Alignment:
| Q |
1 |
aagaggatgatcaccttttcaaggggatgtaacaaaacatctatggtggatgtgatgtctctatacatattaaatttttgtattggtctaacacatcctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38307953 |
aagaggatgatcaccttttcaaggggatgtaacaaaacatctatggtggatgtgatgtctctatacatattaaatttttgtattggtctaacacatcctt |
38308052 |
T |
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| Q |
101 |
atcaaatcaacttgtaagctgaaaagtgttaatttttataaactctagttagactttacctttaatccacgtagaatttggatttttcaatatataatac |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38308053 |
attaaatcaacttgtaagctgaaaagtgttaatttttataaactctagttagactttacctttaatccacgtagaatttggatttttcaatatataatac |
38308152 |
T |
|
| Q |
201 |
taatgtttttgacatcttgatgcatcaagacttcttcatagctagaaagtaaaaattgttcaccacatctcnnnnnnnnnnnnnggaagcaattctacac |
300 |
Q |
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| T |
38308153 |
taatgtttttgacatcttgatgcatcaagacttcttcatagctagaaagtaaaaattgtttaccacatctcaaaaacaaaaaaaggaagcaattctacac |
38308252 |
T |
|
| Q |
301 |
tctaaagttgtttctacgaagccacattttactgcttagttctctcaaatggattctagattttgtaatgtttgcccaaacaaaatattctctgattttc |
400 |
Q |
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| T |
38308253 |
tctaaagttgtttctacgaagccacattttactgcttagttctctcaaatggattctagattttgtaatgtttgcccaaacaaaatattctctgattttc |
38308352 |
T |
|
| Q |
401 |
ctccactcttttactcattaagtctttattattttgtacacggaagacaaacataagctcaaacaacaactggctaccattcctaataagatatcttt |
498 |
Q |
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| T |
38308353 |
ctctactcttttactcattaagtctttattattttgtacacggaagagaaacataagctcaaacaacaactggctaccattccttataagatatcttt |
38308450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 498
Target Start/End: Original strand, 38316380 - 38316445
Alignment:
| Q |
433 |
tttgtacacggaagacaaacataagctcaaacaacaactggctaccattcctaataagatatcttt |
498 |
Q |
| |
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|||||||||| |||| |||| ||||| |||||| || |||||| ||||||||||| ||||||||| |
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| T |
38316380 |
tttgtacacgaaagagaaactaaagcttaaacaagaattggctagcattcctaataggatatcttt |
38316445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 498
Target Start/End: Original strand, 38325225 - 38325290
Alignment:
| Q |
433 |
tttgtacacggaagacaaacataagctcaaacaacaactggctaccattcctaataagatatcttt |
498 |
Q |
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|||||||| | |||| ||| |||||| ||||||||| |||||||||||||||||| | ||||||| |
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| T |
38325225 |
tttgtacatgaaagagaaatctaagcttaaacaacaattggctaccattcctaatagggtatcttt |
38325290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 433 - 498
Target Start/End: Complemental strand, 38850965 - 38850900
Alignment:
| Q |
433 |
tttgtacacggaagacaaacataagctcaaacaacaactggctaccattcctaataagatatcttt |
498 |
Q |
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|||||||||| |||| |||| |||||| ||||||||| | ||||||||||||||| ||||||||| |
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| T |
38850965 |
tttgtacacgaaagagaaacctaagcttaaacaacaattaactaccattcctaataggatatcttt |
38850900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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