View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1450_high_9 (Length: 403)
Name: NF1450_high_9
Description: NF1450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1450_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 389
Target Start/End: Original strand, 6448921 - 6449313
Alignment:
| Q |
10 |
ataatacttgtgtacttctatcnnnnnnnnnattttaaagaatgtacatagtttcatt-gctcttgggacaaaagggaaggagggtaagggattaattaa |
108 |
Q |
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| T |
6448921 |
ataatacttgtgtacttctatctttgttttttttttaaagaatgtacatagtttcatttgctcttgggacaaaagggaaggagagtaagggattaattaa |
6449020 |
T |
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| Q |
109 |
tgatttggcacttagtgatttgagcaatttcaaagaatgattgtannnnnnn-ccctttctaatctgtgtccatttgtgtcgaaggtggttgactacatt |
207 |
Q |
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| T |
6449021 |
tgatttggcacttagtgatttgagcaatttcaaagaatgattgtattttttttccctttctaatctgtgtccatttgtgtcgaaggtggttgactacatt |
6449120 |
T |
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| Q |
208 |
atggtttcgtcttgaaaatggtttatagttagagaaaaatgtgtttcttgtcttattatgaatggtatatgatctcattggattgcatttaaaggaggta |
307 |
Q |
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| T |
6449121 |
atggtttcgtcttgaaaatggtttatagttagagaaaaatgtgtttcttgtcttattatgaatggtatatgatatcattggattgcatttaaaggaggta |
6449220 |
T |
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| Q |
308 |
-----------gcttggttctatttttcttataattttttcttaatttataatgagtttggagtatcatccgtttgctattatatatagtttt |
389 |
Q |
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| T |
6449221 |
gcgcctaatatgcttggtcctatttttcttataattttttcttaatttataatgagtttggagtatcatccgtttgctattataaatagtttt |
6449313 |
T |
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