View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1450_low_13 (Length: 333)
Name: NF1450_low_13
Description: NF1450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1450_low_13 |
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| [»] scaffold0449 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 74 - 323
Target Start/End: Original strand, 41167139 - 41167392
Alignment:
| Q |
74 |
gatcataggttttgagactgttacatatatgttacaggtaacttttgggtcatttcttttttgttattacaaagtcaaaggtatagaatataatataaag |
173 |
Q |
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| T |
41167139 |
gatcataggttttgagactgttacatatatgttacaggtaacttttgggtcatttcttttttgttattacaaagtcaaaggtatagaatataatataatg |
41167238 |
T |
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| Q |
174 |
gccattatagggggaataaattaatagtatta----caaaaagaaaactatagtaaactaaacatttagtttttgatttaannnnnnnattctatgttag |
269 |
Q |
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| T |
41167239 |
gccattatagggggaataaattaatagtattattacaaaaaagaaaactatagtaaactaaacatttagtttttgatttaatttttttattctatgttag |
41167338 |
T |
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| Q |
270 |
ctcaaagtttgttagttgagctaaatattcaactcaatatggtattaatctgtg |
323 |
Q |
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| T |
41167339 |
ctcaaagtttgttagttgagctaaatattcaactcaatatggtattaatctgtg |
41167392 |
T |
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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 41167084 - 41167122
Alignment:
| Q |
18 |
aatctcctcttaattatgagtttctaattcattgttatg |
56 |
Q |
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| T |
41167084 |
aatctcctcttaattatgagtttctaattcattgttatg |
41167122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0449 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 682 - 621
Alignment:
| Q |
259 |
ttctatgttagctcaaagtttgttagttgagctaaatattcaactcaatatggtattaatct |
320 |
Q |
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| T |
682 |
ttctatgttagcttaaagtttgttagttgggataaatagtttgttcaatatggtattaatct |
621 |
T |
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