View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1450_low_15 (Length: 312)

Name: NF1450_low_15
Description: NF1450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1450_low_15
NF1450_low_15
[»] chr7 (1 HSPs)
chr7 (1-312)||(47285924-47286235)


Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 47285924 - 47286235
Alignment:
Q  1 attatactaaaccgtttatctgatttggtttctgatgaactgaaaattaccggtgttaaaacaggttgacatccgttttcccatccagctgtacctgatc 100  Q
    |||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  47285924 attacactaaatcgtttatctgatttggtttctgatgaacggaaaattaccggtgttaaaacaggttgacgtccgttttcccatccagctgtacctgatc 47286023  T
Q  101 cagcgccgttaattataataacatcgccgttaggtagaattaacatgtctcccattactcttgccattggcatattctcaataatccaactaggattcga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47286024 cagcgccgttaattataataacatcgccgttaggtagaattaacatgtctcccattactcttgccattggcatattctcaataatccaactaggattcga 47286123  T
Q  201 atccgttactttgagaaatccacatgttttaagtgctggcatgaagttctttccctttgcagcttcgaatgatcctcgaggtgctcccccacagatcatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47286124 atccgttactttgagaaatccacatgttttaagtgctggcatgaagttctttccctttgcagcttcgaatgatcctcgaggtgctcccccacagatcatg 47286223  T
Q  301 attgtagcttcc 312  Q
    ||||||||||||    
T  47286224 attgtagcttcc 47286235  T

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