View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1450_low_17 (Length: 293)
Name: NF1450_low_17
Description: NF1450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1450_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 15550300 - 15550028
Alignment:
| Q |
18 |
actatatatttggatgaagttttatggacatgattatatttataagcctttttaattcactagttgaatatttactagaagttattgaatgctaccattt |
117 |
Q |
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| T |
15550300 |
actacatatttggatgaagttttatggacatgattat-tttataagcctttttaattcaatagttgaatatttacaagaagttattgaatgctaccaatt |
15550202 |
T |
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| Q |
118 |
taatagattttctgtcattttacaaatagcaatgttcatgatat--caaaatcaattaattggatatgtatcctaatttttgtatagaatatggtaattt |
215 |
Q |
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|||||||||||||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
15550201 |
taatagattttctgtcatttcacaaatacaaaggttcatgatatatcaaaatcaattaattggatatgtatgctaatttttgtatagaatatggtaattt |
15550102 |
T |
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| Q |
216 |
ttcgttttaatcgatgtcatatgccaggtagtgacaaatactaggttcataataaaccgactatattgacaatt |
289 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15550101 |
ttcgttttaattgatgtcatatgccaggtagtgacaaatactaggttcacaataaaccgactatattgacaatt |
15550028 |
T |
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