View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1450_low_18 (Length: 289)
Name: NF1450_low_18
Description: NF1450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1450_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 26 - 274
Target Start/End: Original strand, 375270 - 375518
Alignment:
| Q |
26 |
gaagagcataaagccatttctccagctcaagtttcagactgacatggtgattaaaaatggtgtacctgatgttcattctactaaaccatgttcaacacac |
125 |
Q |
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| T |
375270 |
gaagagcataaagccatttctccagctcaagtttcagactgacatggtaattaaaaatggtgtacctaatgttcattctactaaaccatgttcaacatcc |
375369 |
T |
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| Q |
126 |
atgtcacattcccctaggaacacaaggagggtaaggagaaagtttgg-ctctagagttgaagtagaagataattcattgcattgaatatacagtgattat |
224 |
Q |
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| T |
375370 |
atgtcacatt-ccctaggaacacaaggagggtaaggagaaagtttggcccctagaattgaagcaaaagataattcattgcattgaatatacagtgattat |
375468 |
T |
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| Q |
225 |
ttcttcaagagcttgtggatgcatgagttgcaaaattttaatgtgtaaat |
274 |
Q |
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| T |
375469 |
ttcttcaagagcttgtggatgcatgagttgcaaaattttaatgtgtaaat |
375518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 1571834 - 1571991
Alignment:
| Q |
17 |
gaatcagttgaagagcataaagccatttctccagctcaagtttcagact--gacatggtgattaaaaatggtgtacctgatgttcattctactaaaccat |
114 |
Q |
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| T |
1571834 |
gaatcagttgaagagaagaaatcgatttctcgagatcaagtttcagactctgacatggtcactgagaatgctgttcctaatgctcattctattaaaccat |
1571933 |
T |
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| Q |
115 |
gttcaacacacatgtcacattcccctaggaacacaaggagggtaaggagaaagtttgg |
172 |
Q |
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| T |
1571934 |
gttcaacatccaagacacatttccctaggaacacaaggagggtaaggaggaagtttgg |
1571991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 1560410 - 1560253
Alignment:
| Q |
17 |
gaatcagttgaagagcataaagccatttctccagctcaagtttcagactg--acatggtgattaaaaatggtgtacctgatgttcattctactaaaccat |
114 |
Q |
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| T |
1560410 |
gaatcagttgaagagtagaaatccatttctcgagatcaagtttcagactctaacatggtcactgcgaatgctgttcctaatgctcattctattaaaccat |
1560311 |
T |
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| Q |
115 |
gttcaacacacatgtcacattcccctaggaacacaaggagggtaaggagaaagtttgg |
172 |
Q |
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| T |
1560310 |
gttcaacatccaagacacatttccctaggaacacaaggagggtaaggaggaagtttgg |
1560253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 172
Target Start/End: Original strand, 1096959 - 1097050
Alignment:
| Q |
81 |
aatggtgtacctgatgttcattctactaaaccatgttcaacacacatgtcacattcccctaggaacacaaggagggtaaggagaaagtttgg |
172 |
Q |
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| T |
1096959 |
aatgctgttcctaatgctcattctattaaaccatgttcaacatccaagacacatttccctaggaacacaaggagggtaaggaggaagtttgg |
1097050 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 17 - 163
Target Start/End: Complemental strand, 24496726 - 24496578
Alignment:
| Q |
17 |
gaatcagttgaagagcataaagccatttctccagctcaagtttcaga--ctgacatggtgattaaaaatggtgtacctgatgttcattctactaaaccat |
114 |
Q |
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||||||| ||||||||| ||| ||||||||||||||||||||||||| |||||||||| | | | |||| ||||||| ||| ||||||| |||||| | |
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| T |
24496726 |
gaatcagctgaagagcagaaatccatttctccagctcaagtttcagactctgacatggtaactgagaatgctgtacctaatgcccattctattaaacctt |
24496627 |
T |
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| Q |
115 |
gttcaacacacatgtcacattcccctaggaacacaaggagggtaaggag |
163 |
Q |
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| T |
24496626 |
gttcaacaaccaagactcatttccctaggaacacaaggagggtaaggag |
24496578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 24496560 - 24496502
Alignment:
| Q |
218 |
tgattatttcttcaagagcttgtggatgca-tgagttgcaaaattttaatgtgtaaatt |
275 |
Q |
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|||||||||||||||||| ||||||||||| |||||| ||| || ||||||||||||| |
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| T |
24496560 |
tgattatttcttcaagagtttgtggatgcagtgagttacaacatcataatgtgtaaatt |
24496502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 18734934 - 18734778
Alignment:
| Q |
17 |
gaatcagttgaagagcataaagccatttctccagctcaagtttcagact--gacatggtgattaaaaatggtgtacctgatgttcattctactaaaccat |
114 |
Q |
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| T |
18734934 |
gaatcagttgaagagcagaaatgcatttccccagctcaagtttcagactctgacatggtcac-atgaattctgttcctaatgctcattctattaaacctt |
18734836 |
T |
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| Q |
115 |
gttcaacacacatgtcacattcccctaggaacacaaggagggtaaggagaaagtttgg |
172 |
Q |
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|||||||| || | | |||| ||||||||||||||||| ||||||||| |||||||| |
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| T |
18734835 |
gttcaacaaccaagactcatttccctaggaacacaaggaaggtaaggaggaagtttgg |
18734778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 18727694 - 18727646
Alignment:
| Q |
17 |
gaatcagttgaagagcataaagccatttctccagctcaagtttcagact |
65 |
Q |
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| T |
18727694 |
gaatcagttgaagagcagaaatgcatttccccagctcaagtttcagact |
18727646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 18727635 - 18727586
Alignment:
| Q |
123 |
cacatgtcacattcccctaggaacacaaggagggtaaggagaaagtttgg |
172 |
Q |
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| T |
18727635 |
cacatgactcatttccctaggaacacaaggaaggtaaggaggaagtttgg |
18727586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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