View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1450_low_22 (Length: 270)
Name: NF1450_low_22
Description: NF1450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1450_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 42982336 - 42982098
Alignment:
| Q |
20 |
gatttgataacaaaataccgagagaatgagcaacgccactgttttcattcgcatattttatgcgttcaattcttaatccctagttaaagttatcatgagg |
119 |
Q |
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| T |
42982336 |
gatttgataacaaa-taccgagagaatgagcaacgccactgttttcattcgcatattttatgcgttcaattcttaatccctagttaaagttatcatgagg |
42982238 |
T |
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| Q |
120 |
ttaattattaggttgatccatttgtgtgagtttagcttttgcaccaatcaaagctcaatcacgtggtgacctagatttgtttcatcattcagcgtgtagc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42982237 |
ttaattattaggttgatccatttgtgtgagtttagcttttgcaccaatcaaagctcaatcacgtggtggcctagatttgtttcatcattcagcgtgtagc |
42982138 |
T |
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| Q |
220 |
tacaattccaattgaattgctaatccttcatcaatttcat |
259 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| |
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| T |
42982137 |
tacaattccaattgaattgccaatccttcatcaatttcat |
42982098 |
T |
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