View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1450_low_29 (Length: 232)
Name: NF1450_low_29
Description: NF1450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1450_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 18591863 - 18592075
Alignment:
| Q |
1 |
tagacatccctctatttttttaaattagagaaaaacacatttttagctataaagacacnnnnnnnnnnaaggaaaataaacacatttttaatgcttagta |
100 |
Q |
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|||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
18591863 |
tagagatccctctatttttttaaattagagaaacacacctttttagctataaagacacttttttttt-aaggaaaataaacacatttttaatgcttagta |
18591961 |
T |
|
| Q |
101 |
aacttttttacatacataaaatcataataatggagccttcttgttattttgagaaatagaacgatgaagcacggacacggacaccagatacgacatgaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
18591962 |
aacttttttacatacataaaatcataataatggagccttcttgttattttgagaaatagaacgatgaagcacggacacggacacgagatacgacataaac |
18592061 |
T |
|
| Q |
201 |
actgatacgccgac |
214 |
Q |
| |
|
||||||| |||||| |
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| T |
18592062 |
actgatatgccgac |
18592075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 8365626 - 8365576
Alignment:
| Q |
164 |
atgaagcacggacacggacaccagatacgacatgaacactgatacgccgac |
214 |
Q |
| |
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|||||||||||| |||||||||||| |||||| | ||||||| |||||||| |
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| T |
8365626 |
atgaagcacggatacggacaccagacacgacacggacactgacacgccgac |
8365576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 10649280 - 10649330
Alignment:
| Q |
164 |
atgaagcacggacacggacaccagatacgacatgaacactgatacgccgac |
214 |
Q |
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|||||||||||| ||||||||| ||||||||| |||| |||||||||||| |
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| T |
10649280 |
atgaagcacggatacggacaccggatacgacacaaacaatgatacgccgac |
10649330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 55401027 - 55401077
Alignment:
| Q |
164 |
atgaagcacggacacggacaccagatacgacatgaacactgatacgccgac |
214 |
Q |
| |
|
||||||||| || ||||||||| ||||||||| | |||||||||||||||| |
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| T |
55401027 |
atgaagcacagatacggacaccggatacgacacggacactgatacgccgac |
55401077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 3281260 - 3281220
Alignment:
| Q |
174 |
gacacggacaccagatacgacatgaacactgatacgccgac |
214 |
Q |
| |
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|||||||| | ||||||||||||| |||||||||||||||| |
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| T |
3281260 |
gacacggatatcagatacgacatggacactgatacgccgac |
3281220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 10572690 - 10572646
Alignment:
| Q |
170 |
cacggacacggacaccagatacgacatgaacactgatacgccgac |
214 |
Q |
| |
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|||||| ||||||||| || |||||||||||||||| |||||||| |
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| T |
10572690 |
cacggatacggacaccggacacgacatgaacactgacacgccgac |
10572646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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