View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1450_low_5 (Length: 487)
Name: NF1450_low_5
Description: NF1450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1450_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 55 - 472
Target Start/End: Complemental strand, 30056862 - 30056446
Alignment:
| Q |
55 |
gtttcagtactccagtttaattcatctcatatatagttcataactatttatttgtccttaattattttaattttgtgatttgtaataataattacaggta |
154 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||| |
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| T |
30056862 |
gtttcagtactctagtttaattcatctcatatatagttcataactatttatttgttcttaattattt-aattttgtaatttgtaacaataattacaggta |
30056764 |
T |
|
| Q |
155 |
gttgctgggcattttctgctgtgggtgcactggaaggtatcgaacaaataactagtggaaatttagtgtccctttctgaacaagaacttgtggatcatgt |
254 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30056763 |
gttgctgggcattttctgctgtgggtgcactagaaggtatccaacaaataactagtggaaatttagtgtccctttctgaacaagaacttgtggatcgtgt |
30056664 |
T |
|
| Q |
255 |
cagaagtaattggacaaatggatgcaacggtggttatttgattgatgcttttgaattcgtcttagtaaacggtggaattgccacagaagcaagttatccg |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30056663 |
cagaagtaattggacaaatggatgcaacggtggttatttgattgatgcttttgaattcgtcttagaaaacggtggaattgccacagaagcaagttatccg |
30056564 |
T |
|
| Q |
355 |
tacagaggagttaaaggaaataatagtaagaaggttcgtcgccaagttcagattaagagctacgagcaagtccctagaaatagtgaggattcactgctta |
454 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30056563 |
tacagaggagttaaaggaaataatagtaagaaggttagtcgccaagttcagattaagagctacgagcaagtccctagaaatagtgaggattcactgctta |
30056464 |
T |
|
| Q |
455 |
aagttgtggccaatcaac |
472 |
Q |
| |
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|||||||||||||||||| |
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| T |
30056463 |
aagttgtggccaatcaac |
30056446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 55 - 472
Target Start/End: Original strand, 29746433 - 29746847
Alignment:
| Q |
55 |
gtttcagtactccagtttaattcatctcatatat-agttcataactatttatttgtccttaattattttaattttgtgatttgtaataataattacaggt |
153 |
Q |
| |
|
|||||||||||| |||||||||||||||||| | ||||||||| |||||||||||||| | ||||||||||| |||| |||||| ||| |||||| |
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| T |
29746433 |
gtttcagtactctagtttaattcatctcatagcttagttcataa----ttatttgtccttaaattatttaattttgt-attt-taataacaataacaggt |
29746526 |
T |
|
| Q |
154 |
agttgc-----tgggcattttctgctgtgggtgcactggaaggtatcgaacaaataactagtggaaatttagtgtccctttctgaacaagaacttgtgga |
248 |
Q |
| |
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|||| | |||||||||||| | |||| |||| | ||||||||| |||||||||| |||||||||||||| ||| |||| || ||| |||||||||| |
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| T |
29746527 |
agttacgttgttgggcattttctacggtggctgcaatagaaggtatccaacaaataaccagtggaaatttagtctccttttcagagcaacaacttgtgga |
29746626 |
T |
|
| Q |
249 |
tcatgtcagaagtaattggacaaatggatgcaacggtggttatttgattgatgcttttgaattcgtcttagtaaacggtggaattgccacagaagcaagt |
348 |
Q |
| |
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| |||| |||||||||||| |||||||| || |||||| || ||||||||||||| ||||| |||| |||||||||||||||||||||||||||| |
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| T |
29746627 |
ttgtgtcgcaagtaattggaccaatggatgtaatggtggtaataagattgatgcttttaaattcaatttagaaaacggtggaattgccacagaagcaagt |
29746726 |
T |
|
| Q |
349 |
tatccgtacagaggagttaaaggaaataatagtaagaaggttcgtcgccaagttcagattaagagctacgagcaagtccctagaaatagtgaggattcac |
448 |
Q |
| |
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||||| |||| |||||||||||| |||||||||||||| | || |||||||||||||||| |||||||||||||||||| |||||| ||||| |||| |
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| T |
29746727 |
tatccatacaagggagttaaagga---aatagtaagaaggtgcatcaccaagttcagattaagggctacgagcaagtccctaaaaatagcgaggactcac |
29746823 |
T |
|
| Q |
449 |
tgcttaaagttgtggccaatcaac |
472 |
Q |
| |
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| |||||||||||||||||||||| |
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|
| T |
29746824 |
tacttaaagttgtggccaatcaac |
29746847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 55 - 369
Target Start/End: Complemental strand, 29606735 - 29606417
Alignment:
| Q |
55 |
gtttcagtactccagtttaattcatctcatatat-agttcataactatttatttgtccttaattattttaattttgtgatttgtaataataattacaggt |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |||||||| |||| |||||| ||| |||||| |
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|
| T |
29606735 |
gtttcagtactccagtttaattcatctcatagcttagttcataa----ttatttgtccttaattattt-aattttgt-attt-taataacaataacaggt |
29606643 |
T |
|
| Q |
154 |
agttgc-----tgggcattttctgctgtgggtgcactggaa-----ggtatcgaacaaataactagtggaaatttagtgtccctttctgaacaagaactt |
243 |
Q |
| |
|
|||| | |||||||||||| |||| |||| | ||| |||||| ||||||||| |||||||||||||| ||| |||| || ||| ||||| |
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|
| T |
29606642 |
agttacgttgttgggcattttctatggtggctgcaatagaatagaaggtatccaacaaataatcagtggaaatttagtctccttttcagagcaacaactt |
29606543 |
T |
|
| Q |
244 |
gtggatcatgtcagaagtaattggacaaatggatgcaacggtggttatttgattgatgcttttgaattcgtcttagtaaacggtggaattgccacagaag |
343 |
Q |
| |
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|||||| ||||| |||||||||||| |||||||| || |||||| || ||||||||||||| ||||| | |||| ||||||||||||||||||||||| |
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| T |
29606542 |
gtggattgtgtcacaagtaattggaccaatggatgtaatggtggtaataagattgatgcttttaaattcattttagaaaacggtggaattgccacagaag |
29606443 |
T |
|
| Q |
344 |
caagttatccgtacagaggagttaaa |
369 |
Q |
| |
|
|||||||||| |||| ||||||||| |
|
|
| T |
29606442 |
caagttatccatacaagggagttaaa |
29606417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 131 - 472
Target Start/End: Complemental strand, 29733723 - 29733382
Alignment:
| Q |
131 |
gatttgtaataataattacaggtagttgctgggcattttctgctgtgggtgcactggaaggtatcgaacaaataactagtggaaatttagtgtccctttc |
230 |
Q |
| |
|
||||||||| || ||| ||||||||||||||||||||||||||||||| ||| | ||||||||| || |||||||||||||||||||||| |||||||| |
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|
| T |
29733723 |
gatttgtaacaacaataacaggtagttgctgggcattttctgctgtggctgcgatagaaggtatccaaaaaataactagtggaaatttagtttccctttc |
29733624 |
T |
|
| Q |
231 |
tgaacaagaacttgtggatcatgtcagaagtaattggacaaatggatgcaacggtggttatttgattgatgcttttgaattcgtcttagtaaacggtgga |
330 |
Q |
| |
|
|| || ||||||||||| || |||||| | |||| || ||||| | ||| || ||||| |||||||| ||||| | |||| ||| |||||| |
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|
| T |
29733623 |
agagcagcaacttgtggattgtgatagaagtggtcggactaaaggatgtgataacggtaatatgattaatgcttttaaattcattttagaaaatggtgga |
29733524 |
T |
|
| Q |
331 |
attgccacagaagcaagttatccgtaca---gaggagttaaaggaaataatagtaagaaggttcgtcgccaagttcagattaagagctacgagcaagtcc |
427 |
Q |
| |
|
||||| |||||||||| |||||| |||| ||| ||||||||| | | |||| ||||| ||| | ||||||| ||||||||||| || |||||| |
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|
| T |
29733523 |
attgcgacagaagcaaattatccatacaagcgagttgttaaagga---acttgtaaaaaggtaagtcacaaagttcaaattaagagctatgaagaagtcc |
29733427 |
T |
|
| Q |
428 |
ctagaaatagtgaggattcactgcttaaagttgtggccaatcaac |
472 |
Q |
| |
|
|||| |||||||| |||||||| ||||||| |||||||||||||| |
|
|
| T |
29733426 |
ctagtaatagtgaagattcactacttaaagctgtggccaatcaac |
29733382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 456
Target Start/End: Complemental strand, 34759101 - 34759009
Alignment:
| Q |
361 |
ggagttaaaggaaataatagtaagaaggttcgtcgccaagttcagattaagagctacgagcaagtccctagaaatagtgaggattcactgcttaaa |
456 |
Q |
| |
|
||||||||||||||| ||||||| || ||| ||||||| |||||||||||| |||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
34759101 |
ggagttaaaggaaatt---gtaagaatgtgtgtcaccaagtttggattaagagctataagcaagtccctaaaaatagtgaggattcactacttaaa |
34759009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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