View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1450_low_6 (Length: 420)
Name: NF1450_low_6
Description: NF1450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1450_low_6 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 21 - 420
Target Start/End: Original strand, 12095450 - 12095847
Alignment:
| Q |
21 |
attactattattttaacacattttcttataaatgccccatgttatatgaggccgataaatgtgtaaccgagtgagtactaattactcacttacaaggagg |
120 |
Q |
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| T |
12095450 |
attactattattttaacacattttcttataaatgccccatgttatatgaggccgataaatgtgtaaccgattgagtactaatt--tcacttacaaggagg |
12095547 |
T |
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| Q |
121 |
cccgttcttgagcaagcgctaagagctctatggagccgggacggccctgcttacaaggaggcaaaggagaaccacacaagcccttattatgcgaaaatga |
220 |
Q |
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| T |
12095548 |
ccctttcttgagcaagtgcgaagagctctatggagccgggacggccctgcttacaaggaggcaaaggagaaccacacaagcccttattatgcgaaaacga |
12095647 |
T |
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| Q |
221 |
cgatggatcaaactcttgcaacttccctccaactgtcggtataggaccggaaagctggttgtagctcacattgaagtcgtacaacaatgacgcttggcct |
320 |
Q |
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| T |
12095648 |
cgatggatcaaactcttgcaacttccctccaactgtcggtataggaccgaaaagctggttgtagctcacattgaagtcgtacaacaatgacgcttggcct |
12095747 |
T |
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| Q |
321 |
aaccaagctggcaactttccgtatatcatgttattttccaaccgtaagaccagcaaattcgagtccagttgtcccactggcattaccaccttagagaggt |
420 |
Q |
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| T |
12095748 |
aaccaagctggcaactttccgtatatcatgttattttccaaccgtaagacaagcaaattcgattccagttgtcccactggcattaccaccttagagaggt |
12095847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 170 - 413
Target Start/End: Original strand, 12078957 - 12079200
Alignment:
| Q |
170 |
cttacaaggaggcaaaggagaaccacacaagcccttattatgcgaaaatgacgatggatcaaactcttgcaacttccctccaactgtcggtataggaccg |
269 |
Q |
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| T |
12078957 |
cttacaagggggcaaaggagaaccacacaaacacttattatgcgaaaacgacgatggatcaaacccttgcaacttccctccgactgtcggtataggacca |
12079056 |
T |
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| Q |
270 |
gaaagctggttgtagctcacattgaagtcgtacaacaatgacgcttggcctaaccaagctggcaactttccgtatatcatgttattttccaaccgtaaga |
369 |
Q |
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| T |
12079057 |
caaagttggttgttgctcacattgaagtcatacaacaatgacgcttggcctaaccaagctggcaactttccatatataaggttattttccaaccgcaaga |
12079156 |
T |
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| Q |
370 |
ccagcaaattcgagtccagttgtcccactggcattaccacctta |
413 |
Q |
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| T |
12079157 |
ccagcaaattcgagtccagttgtcccactggcattaccacctta |
12079200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 12078878 - 12078965
Alignment:
| Q |
30 |
attttaacacattttcttataaatgccccatgttatatgaggccgataaatgtgtaaccgagtgagtactaattactcacttacaagg |
117 |
Q |
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| T |
12078878 |
attttaacacattttcttacaaatgacccatgtcaaatgaggctgataaatgtgtaaccgagagagtactaattactcacttacaagg |
12078965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 1249247 - 1249176
Alignment:
| Q |
220 |
acgatggatcaaactcttgcaacttccctccaactgtcggtataggaccggaaagctggttgtagctcacat |
291 |
Q |
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| T |
1249247 |
acgacggatcaaacccttgcaacttccctccatcctttggtataggaccacaaagctggttgtggctcacat |
1249176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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