View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1450_low_7 (Length: 413)
Name: NF1450_low_7
Description: NF1450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1450_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 400
Target Start/End: Complemental strand, 14328996 - 14328620
Alignment:
| Q |
16 |
tgtttatccttttgcaaaagaaagaaaatattgggaatgcctaaggtagaatagtatatttttaccatggaattgttttaaaatggtgtagtggtgcacc |
115 |
Q |
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| T |
14328996 |
tgtttatccttttgcaaaagaaagaaaatattgggaatgcctaaggtagaatagtatatttttaccatggaattgttttaaaatggtgtagtggtgcacc |
14328897 |
T |
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| Q |
116 |
taaatattttagataaaatttagtgnnnnnnntgttaagtggtttttctaaatagtctaatattagaactcacacacactgaatgtagtttcaaattttt |
215 |
Q |
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| T |
14328896 |
taaatattttagataaaatttagtgaaaaaaatgtcaagtggtttttctaa-tagtctaatattagaactcacacacactaaatgtagtttcaaattttt |
14328798 |
T |
|
| Q |
216 |
gtacctgaaggctgaagatatgaaattaatgtctgaggattttttaccctatgaaacatagttatgggacaatactatttgaaatgagacatgtagtcta |
315 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14328797 |
gtacctgaag-------atatgaaattaatgtctgaggattttttaccctatgaaacatagttatgggacaatactatttgaaatgagacatgtagtcta |
14328705 |
T |
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| Q |
316 |
gatttggtggtcttatgtcctggtctatggtcagctactgtcacggcaccaacattgcactctttcttcgttcatctgctgcttc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14328704 |
gatttggtggtcttatgtcctggtctatggtcagctactgtcacggcaccaacattgcactctttcttcgttcatctgctgcttc |
14328620 |
T |
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