View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1450_low_8 (Length: 409)
Name: NF1450_low_8
Description: NF1450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1450_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 29 - 399
Target Start/End: Original strand, 25818179 - 25818547
Alignment:
| Q |
29 |
aaacaacataatcaaattaagaaaccatagtttgatgtttatagaatttgtcatcattatatatcttttctcttaatttgtctcaatctcctcacaatta |
128 |
Q |
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| T |
25818179 |
aaacaacataatcaaattaagaaaccatagtttgatgttcatagaatttgtcatcattatatatcttttctcttaatttgtcccaatctcctcacaatta |
25818278 |
T |
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| Q |
129 |
tggtttttcaaatgaagaggaaattatatatatagaaaatgatgaagaggagtcaaaaatctagaaacacttgaccaattaatttggctgccttaacatt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25818279 |
tggtttttcaaatgaagaggaaattatatatatagaaaatgatgaagaggagtc-aaaatctagaaactattgaccaattaatttggctgccttaacatt |
25818377 |
T |
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| Q |
229 |
acaataacattattatatgtcaaaatgtttttcagtgtaggagcacaatattttgtcgataacatgcatttcacactaatatga-attttttaatttatt |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||| ||||| |
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| T |
25818378 |
acaataacattattatatgtcaaaatgtttttcagtgtaggagcacaatattttgtcgataacatgcatttcacactaaaacgattttttttaaattatt |
25818477 |
T |
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| Q |
328 |
ttatacctctatttcattacatcaatcattatacatataaatttgttctcaaatctcatcgatctctttctt |
399 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25818478 |
ttatacctctatttcgttacatcaatcattatac--ataaatttgttctcaaatctcatcgatctctttctt |
25818547 |
T |
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