View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14510_high_1 (Length: 454)

Name: NF14510_high_1
Description: NF14510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14510_high_1
NF14510_high_1
[»] chr1 (1 HSPs)
chr1 (109-454)||(42518916-42519261)


Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 109 - 454
Target Start/End: Original strand, 42518916 - 42519261
Alignment:
Q  109 aaggtgaatagttggtgaagagtgaagatgaataactcagtagcttcagagaacagttttattattgaaagtgatgaagaagatgataaggattttaaca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42518916 aaggtgaatagttggtgaagagtgaagatgaataactcagtagcttcagagaacagttttattattgaaagtgatgaagaagatgataaggattttaaca 42519015  T
Q  209 aaggtgatgatggaaatgattctgattcttccaattactcaaatgaaaatccaccacagaggaaacaaagttcttataatccatcatggcctcagagtta 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42519016 aaggtgatgatggaaatgattctgattcttccaattactcaaatgaaaatccaccacagaggaaacaaagttcttataatccatcatggcctcagagtta 42519115  T
Q  309 caggttaagtccttttttcaatccccctagatttcagtgcacctgtgtgtgtcacttcacgtacctttttgtttgtttctgtttctgcaaatgtaaaggg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42519116 caggttaagtccttttttcaatccccctagatttcagtgcacctgtgtgtgtcacttcacgtacctttttgtttgtttctgtttctgcaaatgtaaaggg 42519215  T
Q  409 aatccttggaatttctggaaataatggttttaattgtcattttttc 454  Q
    |||||||| ||||||||||| ||||||||||| |||||||||||||    
T  42519216 aatccttgtaatttctggaattaatggttttacttgtcattttttc 42519261  T

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