View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14510_high_3 (Length: 236)
Name: NF14510_high_3
Description: NF14510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14510_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 1895919 - 1895709
Alignment:
| Q |
11 |
agagagatgaaatgcaaaacataaagaaattaatcaagggtggcttttgttaaaatcacggtgaatttgacaaaatcttggtagcaccttgttgccaaaa |
110 |
Q |
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| T |
1895919 |
agagatatgaaatgcaaaacataaagaaattaatcaagggtggattttgttaaaatcacggtgaatttgagaaaatcttggtagcaccttgttgccaaaa |
1895820 |
T |
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| Q |
111 |
ttcttgtagcgtgattctgttaaactcaccgtcaattcaaacatttactaagttatataaatatgttgaatgttaatgaaaattgcaatagataaatgtg |
210 |
Q |
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| T |
1895819 |
ttcttatagcgtgattctgtcaaactcaccgtcaattcaaacatttactaagttatataaatatgttgaatgttaatgaaaattgcaatagataaatgtg |
1895720 |
T |
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| Q |
211 |
aaccttctact |
221 |
Q |
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| T |
1895719 |
aaccttctact |
1895709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 67 - 221
Target Start/End: Complemental strand, 1905706 - 1905548
Alignment:
| Q |
67 |
cacggtgaatttgacaaaatcttggtagcaccttgttgccaaaattcttgta----gcgtgattctgttaaactcaccgtcaattcaaacatttactaag |
162 |
Q |
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| T |
1905706 |
cacggtgaatttgacaaaatcgtggaagcaccgtgttgccaaaatcttcgcaacatgcgtgattttgtcaaactcaccgtcaatccaaacagacaccaag |
1905607 |
T |
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| Q |
163 |
ttatataaatatgttgaatgttaatgaaaattgcaatagataaatgtgaaccttctact |
221 |
Q |
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| T |
1905606 |
ttatatacatatgttgtatgttgatgaatattgcaataaataaatgtgaaccttctact |
1905548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 154
Target Start/End: Complemental strand, 17240731 - 17240698
Alignment:
| Q |
121 |
gtgattctgttaaactcaccgtcaattcaaacat |
154 |
Q |
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| T |
17240731 |
gtgattctgtcaaactcaccgtcaattcaaacat |
17240698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 7873144 - 7873192
Alignment:
| Q |
120 |
cgtgattctgttaaactcaccgtcaattcaaacatttactaagttatat |
168 |
Q |
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| T |
7873144 |
cgtgattatgttaaactcaccgtcaatccaaacatgtactaagttatat |
7873192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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