View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14510_low_2 (Length: 454)

Name: NF14510_low_2
Description: NF14510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14510_low_2
NF14510_low_2
[»] chr1 (1 HSPs)
chr1 (109-454)||(42518916-42519261)


Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 109 - 454
Target Start/End: Original strand, 42518916 - 42519261
Alignment:
Q  109 aaggtgaatagttggtgaagagtgaagatgaataactcagtagcttcagagaacagttttattattgaaagtgatgaagaagatgataaggattttaaca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42518916 aaggtgaatagttggtgaagagtgaagatgaataactcagtagcttcagagaacagttttattattgaaagtgatgaagaagatgataaggattttaaca 42519015  T
Q  209 aaggtgatgatggaaatgattctgattcttccaattactcaaatgaaaatccaccacagaggaaacaaagttcttataatccatcatggcctcagagtta 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42519016 aaggtgatgatggaaatgattctgattcttccaattactcaaatgaaaatccaccacagaggaaacaaagttcttataatccatcatggcctcagagtta 42519115  T
Q  309 caggttaagtccttttttcaatccccctagatttcagtgcacctgtgtgtgtcacttcacgtacctttttgtttgtttctgtttctgcaaatgtaaaggg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42519116 caggttaagtccttttttcaatccccctagatttcagtgcacctgtgtgtgtcacttcacgtacctttttgtttgtttctgtttctgcaaatgtaaaggg 42519215  T
Q  409 aatccttggaatttctggaaataatggttttaattgtcattttttc 454  Q
    |||||||| ||||||||||| ||||||||||| |||||||||||||    
T  42519216 aatccttgtaatttctggaattaatggttttacttgtcattttttc 42519261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University