View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14510_low_3 (Length: 353)
Name: NF14510_low_3
Description: NF14510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14510_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 334
Target Start/End: Original strand, 3110776 - 3111100
Alignment:
| Q |
17 |
agcataggtttgaatattgtgtgaaaaaccatgttggtttttgagttgagtgaagtaagagaatgcaagtgaagggttgttcggtgaaggtagagnnnnn |
116 |
Q |
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| T |
3110776 |
agcataggtttgaatattgtgtgaaaaaccatgttggtttttgagttgagtgaagtaagagaatgcaagtgaagggttgttcggtgaaggtagagttttt |
3110875 |
T |
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| Q |
117 |
nngaggattttgaaggtgttagggttaaaagatgagatttttaagggttt--------------ctgaggaacagagtgcaagtgtagtggaagatgaaa |
202 |
Q |
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| T |
3110876 |
t-gaggattttgaaggtgttagggttaaaagatgagatttttaagggttttttatatagggtttctgaggaacagagtgcaagtgtagtggaagacgaaa |
3110974 |
T |
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| Q |
203 |
acctgaatttgttgaagtgaatggttttggttttggttttggaaagaggaagaggaagaagaatgagtgaagggaatttcaagagacgacacaacatacc |
302 |
Q |
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| T |
3110975 |
acctgaatctgttgaagtgaatggt------tttggttttggaaagaggaagaggaagaagaatgagtgaagggaatttcaagagacgacacaacatacc |
3111068 |
T |
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| Q |
303 |
ggtggtgttgttgcggttgctgacggcgttgc |
334 |
Q |
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| T |
3111069 |
ggtggtgttgttgcggttgctgacggcgttgc |
3111100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 3103783 - 3103929
Alignment:
| Q |
20 |
ataggtttgaatattgtgtgaaaaaccatgttggtttttgagttgagtgaagtaagagaatgcaagtgaagggttg-ttcggtgaaggtagagnnnnnnn |
118 |
Q |
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| T |
3103783 |
ataggtttgaatattgtgagaaaacccatgttggtttttgagttgagtaaagtaagagtaagcaagtgaagggttgttttgataaagataaag-tttttg |
3103881 |
T |
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| Q |
119 |
gaggattttgaaggtgttagggttaaaagatgagatttttaagggttt |
166 |
Q |
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| T |
3103882 |
gaggattttgaaggtgttaggttcaaaagatgagatttttgagggttt |
3103929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 3104030 - 3104079
Alignment:
| Q |
253 |
agaggaagaagaatgagtgaagggaatttcaagagacgacacaacatacc |
302 |
Q |
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| T |
3104030 |
agaggaagaagaatgagagaagggaaattgaaaagacgaaacaacatacc |
3104079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 41626094 - 41626016
Alignment:
| Q |
19 |
cataggtttgaatattgtgtgaaaaaccatgttggtttttgagttgagtgaagtaagagaatgcaagtgaagggttgtt |
97 |
Q |
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| T |
41626094 |
cataggtttgaatattgtgagagaaaccatgttggtttttgagttcagagaagtgcgatagtgcaagagaagggttgtt |
41626016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 41625917 - 41625858
Alignment:
| Q |
179 |
gtgcaagtgtagtggaagatgaaaacctgaatttgttgaagtgaatggttttggttttgg |
238 |
Q |
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| T |
41625917 |
gtgcaagtgctgtggaagatgaaaacctgaatttagtgttgtgaattgttttggttttgg |
41625858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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