View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14511_high_4 (Length: 233)
Name: NF14511_high_4
Description: NF14511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14511_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 31394817 - 31394613
Alignment:
| Q |
17 |
aagaatcaactgaatcatatccaaaaagtgaaacgctcgttgatgcaatattatcatctagcaccacttcatcgatgttgtgttgattgatttgatcaac |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31394817 |
aagaatcaactgagtcatatccaaaaagtgaaacgctcgttgatgcaatattatcatctagcaccacttcatcgatgttgtgttgattgatttgatcaac |
31394718 |
T |
|
| Q |
117 |
actacatagcatagtttccttcatcaaccaataatcatcttcttggaaatcattcatcatgccatgaagactatagccaagagaattctctaccattcta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31394717 |
actacatagcatagtttccttcatcaaccaataatcatcttcttggaaatcattcatcatgccatgaagactatagcctagagaattctctaccattcta |
31394618 |
T |
|
| Q |
217 |
gtata |
221 |
Q |
| |
|
||||| |
|
|
| T |
31394617 |
gtata |
31394613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University