View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14511_low_2 (Length: 401)

Name: NF14511_low_2
Description: NF14511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14511_low_2
NF14511_low_2
[»] chr7 (9 HSPs)
chr7 (116-332)||(16968486-16968702)
chr7 (147-332)||(16992132-16992317)
chr7 (334-401)||(16968333-16968400)
chr7 (143-283)||(17007925-17008050)
chr7 (15-71)||(16968741-16968797)
chr7 (339-401)||(16991979-16992041)
chr7 (147-241)||(16977814-16977908)
chr7 (147-214)||(10601817-10601884)
chr7 (178-235)||(16992331-16992388)
[»] chr4 (3 HSPs)
chr4 (218-332)||(35263168-35263282)
chr4 (147-234)||(35262998-35263085)
chr4 (341-401)||(35263339-35263399)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 116 - 332
Target Start/End: Complemental strand, 16968702 - 16968486
Alignment:
Q  116 aacgggtgggccgaaatactattctgcggtggaggagttggtgagagaggtaatggatagacaaagtggaatttctgagaggaataatgagaaggtgaat 215  Q
    |||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||    
T  16968702 aacgggtgagccgaaatactattatgcggtggaggagctggtgagagaggtaatggatagacaaagtggaatttctgagaggaatgatgaagaggtgaat 16968603  T
Q  216 gttgagaatagtccatcttccacaaatattgatgagttggagcatgcagatcatgctagtgtttcctcctgttccattgagaagaagggtagttcttctt 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16968602 gttgagaatagtccatcttccacaaatattgatgagttggagcatgaagatcatgctagtgtttcctcctgtaccattgagaagaagggtagttcttctt 16968503  T
Q  316 ctaaaccgaatggagta 332  Q
    |||| | ||||||||||    
T  16968502 ctaagctgaatggagta 16968486  T

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Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 147 - 332
Target Start/End: Complemental strand, 16992317 - 16992132
Alignment:
Q  147 gaggagttggtgagagaggtaatggatagacaaagtggaatttctgagaggaataatgagaaggtgaatgttgagaatagtccatcttccacaaatattg 246  Q
    |||||| ||||||||||||  | ||||| | ||||| ||||||||||||||||   |||| ||||  |   |||||  | ||||||||||||||||||||    
T  16992317 gaggagatggtgagagaggggaaggataaaaaaagtagaatttctgagaggaaatgtgaggaggtagagaatgagagcaatccatcttccacaaatattg 16992218  T
Q  247 atgagttggagcatgcagatcatgctagtgtttcctcctgttccattgagaagaagggtagttcttcttctaaaccgaatggagta 332  Q
    ||||||||||||| || || ||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  16992217 atgagttggagcaagccgaccatgctagtgtttcctcctgtaccattgagaagaagggtagttcttcttctaagctgaatggagta 16992132  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 334 - 401
Target Start/End: Complemental strand, 16968400 - 16968333
Alignment:
Q  334 caaagaacaaatccaaggaaaatgctggtgattctgatcgaggaaaatatcaatttgttaaaggctta 401  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16968400 caaaaaacaaatccaaggaaaatgttggtgattctgatcgaggaaaatatcaatttgttaaaggctta 16968333  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 143 - 283
Target Start/End: Complemental strand, 17008050 - 17007925
Alignment:
Q  143 ggtggaggagttggtgagagaggtaatggatagacaaagtggaatttctgagaggaataatgagaaggtgaatgttgagaatagtccatcttccacaaat 242  Q
    ||||||| ||||| | |||||||| |||||||||||| ||||||||||||||| ||||||||||||               ||||||||||||||||| |    
T  17008050 ggtggagaagttgattagagaggtgatggatagacaatgtggaatttctgagaagaataatgagaa---------------tagtccatcttccacaagt 17007966  T
Q  243 attgatgagttggagcatgcagatcatgctagtgtttcctc 283  Q
    | |||||||||||| ||||||||||||||||||||||||||    
T  17007965 actgatgagttggaacatgcagatcatgctagtgtttcctc 17007925  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 16968797 - 16968741
Alignment:
Q  15 atgaatgagatttttggcaatgatgaagacaattcttctagttcctcttatgtgaat 71  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  16968797 atgaatgagatttttggcaatgatgatgacaattcttctagttcctcttatttgaat 16968741  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 339 - 401
Target Start/End: Complemental strand, 16992041 - 16991979
Alignment:
Q  339 aacaaatccaaggaaaatgctggtgattctgatcgaggaaaatatcaatttgttaaaggctta 401  Q
    ||||||||||||||||||| ||| || |||||| |||||||| ||||||||||||||||||||    
T  16992041 aacaaatccaaggaaaatgttggcgactctgatggaggaaaagatcaatttgttaaaggctta 16991979  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 16977908 - 16977814
Alignment:
Q  147 gaggagttggtgagagaggtaatggatagacaaagtggaatttctgagaggaataatgagaaggtgaatgttgagaatagtccatcttccacaaa 241  Q
    ||||| ||||| |||||||| ||||||| |||||||||||||||||    |||| ||||| || | || ||||| ||||||||||||||||||||    
T  16977908 gaggatttggttagagaggtgatggataaacaaagtggaatttctggattgaatgatgaggagataaacgttgaaaatagtccatcttccacaaa 16977814  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 10601817 - 10601884
Alignment:
Q  147 gaggagttggtgagagaggtaatggatagacaaagtggaatttctgagaggaataatgagaaggtgaa 214  Q
    ||||| ||| ||||||||| ||| |||||||| | |||||||||||||| |||||||||| |||||||    
T  10601817 gaggaattgttgagagaggcaattgatagacacaatggaatttctgagatgaataatgaggaggtgaa 10601884  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 16992388 - 16992331
Alignment:
Q  178 aaagtggaatttctgagaggaataatgagaaggtgaatgttgagaatagtccatcttc 235  Q
    |||| |||||||||||||| ||||||||| | || ||||||||||||||| |||||||    
T  16992388 aaaggggaatttctgagagtaataatgaggaagtaaatgttgagaatagttcatcttc 16992331  T

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Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 218 - 332
Target Start/End: Original strand, 35263168 - 35263282
Alignment:
Q  218 tgagaatagtccatcttccacaaatattgatgagttggagcatgcagatcatgctagtgtttcctcctgttccattgagaagaagggtagttcttcttct 317  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  35263168 tgagaatgttccatcttccacaaatattgatgagttggagcatgcagatcatgctagtgtttcctcctgtatcattgagaagaagggtagttcttcttct 35263267  T
Q  318 aaaccgaatggagta 332  Q
    |||| ||||||||||    
T  35263268 aaactgaatggagta 35263282  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 147 - 234
Target Start/End: Original strand, 35262998 - 35263085
Alignment:
Q  147 gaggagttggtgagagaggtaatggatagacaaagtggaatttctgagaggaataatgagaaggtgaatgttgagaatagtccatctt 234  Q
    |||||| ||||||||||||  | ||||| | | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  35262998 gaggagatggtgagagaggggaaggataaaaagagtggaatttctgagaggaataatgagaaagtaaatgttgagaatagtccatctt 35263085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 341 - 401
Target Start/End: Original strand, 35263339 - 35263399
Alignment:
Q  341 caaatccaaggaaaatgctggtgattctgatcgaggaaaatatcaatttgttaaaggctta 401  Q
    ||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  35263339 caaatccaaagaaaatgttggtgattctgatcgaggaaaagatcaatttgttaaaggctta 35263399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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