View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14511_low_5 (Length: 236)
Name: NF14511_low_5
Description: NF14511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14511_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 2381343 - 2381558
Alignment:
| Q |
1 |
ctaaagaacaacatgtgagttggaaatttagtgagagtctaaacatgttattgaccttcaatgaaatattgtatggttccacagtttaaagtgggttaaa |
100 |
Q |
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| T |
2381343 |
ctaaagaacaacatgtgagttgtaagtttagtgagagtctaaacacgttattgaccttcaatgagatattgtatggttccacagtttaaagtgggttaaa |
2381442 |
T |
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| Q |
101 |
ttatgcatgaaatttttaatttactagtgggttaaatgatcaatgtggtaattgtttgtttttgctataatgtagttgacgtaatgcggtaaatttggtg |
200 |
Q |
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| T |
2381443 |
ttatgcatgaaatttttaatttactagtgggttaaatgatcaatgtggtaattgtttgtttttgctataatgtagttgacgtaatgcggtaaatttggtg |
2381542 |
T |
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| Q |
201 |
aatacatgaaatctaa |
216 |
Q |
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|||| ||||||||||| |
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| T |
2381543 |
aatatatgaaatctaa |
2381558 |
T |
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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 26364509 - 26364589
Alignment:
| Q |
142 |
aatgtggtaattgtttgtttttgctataatgta--gttgacgtaatgcggtaaatttggtgaatacatgaaatctaagttt |
220 |
Q |
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| T |
26364509 |
aatgtggtaattgtttgtttttgctataatatatagtttacgtaatgtggtaaatttggtgaatacatgtaatctatgttt |
26364589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 13860726 - 13860804
Alignment:
| Q |
142 |
aatgtggtaattgtttgtttttgctataatgtagttgacgtaatgcggtaaatttggtgaatacatgaaatctaagttt |
220 |
Q |
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| T |
13860726 |
aatgtggtaattgtttgtttttgctaaaatatagtttatgtaatatggtaaatttggtgaatacatgtaatataagttt |
13860804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 52526046 - 52526124
Alignment:
| Q |
142 |
aatgtggtaattgtttgtttttgctataatgtagttgacgtaatgcggtaaatttggtgaatacatgaaatctaagttt |
220 |
Q |
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| T |
52526046 |
aatgtggtaattgtttgtttttgctaaaatataatttatgtaatatggtaaatttggtgaatacatgtaatataagttt |
52526124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 29393485 - 29393553
Alignment:
| Q |
140 |
tcaatgtggtaattgtttgtttttgctataatgtagttgacgtaatgcggtaaatttggtgaatacatg |
208 |
Q |
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| T |
29393485 |
tcaatgtggtgattgtttgcttttgctaaaatgtagttgaattagtttggttaatttgatgaatacatg |
29393553 |
T |
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