View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14512_high_1 (Length: 672)
Name: NF14512_high_1
Description: NF14512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14512_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 565; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 1 - 656
Target Start/End: Original strand, 54219513 - 54220178
Alignment:
| Q |
1 |
ttattgtgacatataaagaacatgcaatgaataaagaagcacataacggggagaacattgtcaatagtcattttcttatacagtattnnnnnnnnn---- |
96 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
54219513 |
ttattgtgacatataaagaacatgcaatgaataaagaagcacataacgggaagaacattgtcaatagtcattttcttatacaatatttaaaaaaaaaata |
54219612 |
T |
|
| Q |
97 |
--------gatgataagtaaatattcaaacatacctcaatagtattatttgttagtttgagagacttgacactaacaagttcactcaatagctccattgc |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54219613 |
aaaaaaaagatgataagtaaatattcaaacatacctcaatagtattatttgttagtttgagagacttgacactaacaagttcactcaatagctccattgc |
54219712 |
T |
|
| Q |
189 |
acaatgagaaacatgtagtggattttcaggataggaaaacttaagatcaatatatgcatcaactatggaggttggtttaacaagaatttattttatagct |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
54219713 |
acaatgagaaacatgtagtggattttcaggataggaaaacttaagatcaatatatgcatcaactatggaggttggtttaacaagaatatattttatagct |
54219812 |
T |
|
| Q |
289 |
ggattactcgtgcaacttaaaaataaagacaaaagattcacagcatcaattatgactatacaacttggaaattgaaacacatatctgatttatgttaacc |
388 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54219813 |
ggattactcgtgcaacttaaaaataaagacaa--gattcacagcatcaattatgactatacaacttggaaattgaaacacatatctgatttatgttaacc |
54219910 |
T |
|
| Q |
389 |
catatgcatttatataagatcaactcttcaaggatagggcacccagagagaagtcgttgggccgacatctcattattgaaggaaagacgtgaaagatata |
488 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54219911 |
catatacatttatataaggtcaactcttcaaggatagggcacccagagagaagtcgttgggccgacatctcattattgaaggaaagacgtgaaagatata |
54220010 |
T |
|
| Q |
489 |
atgtcttcagatttgtgaagcaaataccatcaggtataaacatatggacgccagattctaaatacaacttattcaatgagtgagaagatgagaaattatg |
588 |
Q |
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| T |
54220011 |
atgtcttcagatttgggaagcaaataccatcaggtataaacatatggacgccagattctaaatacaacttattcaatgagtgagaagatgagaaattatg |
54220110 |
T |
|
| Q |
589 |
gggtaacttaaacctagaatctataaaatttagggaaagtttaagatcaaggactttgtgcttcagtg |
656 |
Q |
| |
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| T |
54220111 |
gggtaacttaaacctagaatctataaaatttagggaaagtttaagatcaaggactttgtgcttcagtg |
54220178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 31255550 - 31255632
Alignment:
| Q |
116 |
aacatacctcaatagtattatttgttagtttgagagacttgacactaacaagttcactcaatagctccattgcacaatgagaa |
198 |
Q |
| |
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|||||||||||| ||||| ||| | ||||||||||||||||||| | |||| |||||| |||||| |||||||| |||||| |
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| T |
31255550 |
aacatacctcaagagtatcattagctagtttgagagacttgacattgctaagtccactcagtagctcaattgcacactgagaa |
31255632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 31239041 - 31239087
Alignment:
| Q |
113 |
tcaaacatacctcaatagtattatttgttagtttgagagacttgaca |
159 |
Q |
| |
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||||||||||||| | ||||| ||||| ||||||||||||||||||| |
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| T |
31239041 |
tcaaacatacctcgagagtatcatttgctagtttgagagacttgaca |
31239087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 8e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 396 - 649
Target Start/End: Complemental strand, 17594553 - 17594300
Alignment:
| Q |
396 |
atttatataagatcaactcttcaaggatagggcacccagagagaagtcgttgggccgacatctcattattgaaggaaagacgtgaaagatataatgtctt |
495 |
Q |
| |
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||||||| ||| ||||||||| |||| |||||||||||| | ||| ||||| |||||| ||||||| |||||||||| ||||||||||||| ||||| |
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| T |
17594553 |
atttatacaaggtcaactcttgtaggacagggcacccagacaaaagccgttgagccgacttctcatttgcgaaggaaagatgtgaaagatataacgtctt |
17594454 |
T |
|
| Q |
496 |
cagatttgtgaagcaaataccatcaggtataaacatatggacgccagattctaaatacaacttattcaatgagtgagaagatgagaaattatggggtaac |
595 |
Q |
| |
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|| || | ||| | ||||||||||||||| | | | || ||| |||||||| |||||||||||||||| || || | ||||||||||| ||||||| |
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| T |
17594453 |
caagttagggaaacgtataccatcaggtatatatagaatgaaaccaaattctaaacacaacttattcaatgattgggatgctgagaaattattgggtaac |
17594354 |
T |
|
| Q |
596 |
ttaaacctagaatctataaaatttagggaaagtttaagatcaaggactttgtgc |
649 |
Q |
| |
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|||||||| | | || | ||||||||||||||||||||||| ||||||| |
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| T |
17594353 |
acaaacctagcaaatgtatggtctagggaaagtttaagatcaaggagtttgtgc |
17594300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 17594772 - 17594730
Alignment:
| Q |
230 |
taagatcaatatatgcatcaactatggaggttggtttaacaag |
272 |
Q |
| |
|
||||||||||| ||||||||||||||||||| || |||||||| |
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|
| T |
17594772 |
taagatcaatacatgcatcaactatggaggtagggttaacaag |
17594730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 396 - 649
Target Start/End: Original strand, 14728934 - 14729187
Alignment:
| Q |
396 |
atttatataagatcaactcttcaaggatagggcacccagagagaagtcgttgggccgacatctcattattgaaggaaagacgtgaaagatataatgtctt |
495 |
Q |
| |
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||||||| ||| ||||||||| |||| |||||||||||| | ||| ||||| |||||| ||||||| | |||||||||| ||||||||||||| ||||| |
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| T |
14728934 |
atttatacaaggtcaactcttgtaggacagggcacccagacaaaagccgttgagccgacttctcattttcgaaggaaagatgtgaaagatataacgtctt |
14729033 |
T |
|
| Q |
496 |
cagatttgtgaagcaaataccatcaggtataaacatatggacgccagattctaaatacaacttattcaatgagtgagaagatgagaaattatggggtaac |
595 |
Q |
| |
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|| || | ||| | ||||||||||||||| | | | || ||| ||||||| |||||||||||||||| || || | ||||||||||| ||||||| |
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| T |
14729034 |
caagttagggaaacgtataccatcaggtatatatagagtgaaaccaaattctaagcacaacttattcaatgattgggatgctgagaaattattgggtaac |
14729133 |
T |
|
| Q |
596 |
ttaaacctagaatctataaaatttagggaaagtttaagatcaaggactttgtgc |
649 |
Q |
| |
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|||||||| | | | | ||||||||||||||||||||||| ||||||| |
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|
| T |
14729134 |
acaaacctagcaaatgtttggtctagggaaagtttaagatcaaggagtttgtgc |
14729187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 7639147 - 7639113
Alignment:
| Q |
238 |
atatatgcatcaactatggaggttggtttaacaag |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
7639147 |
atatatgcatcaactatggaggttggtttaacaag |
7639113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 7632449 - 7632409
Alignment:
| Q |
232 |
agatcaatatatgcatcaactatggaggttggtttaacaag |
272 |
Q |
| |
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||||| |||| |||||||||||||||||||||||||||||| |
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|
| T |
7632449 |
agatctatatctgcatcaactatggaggttggtttaacaag |
7632409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 14728597 - 14728671
Alignment:
| Q |
115 |
aaacatacctcaatagtattatttgttagtttgagagacttgacactaacaagttcactcaatagctccattgca |
189 |
Q |
| |
|
|||||||||| || ||||| ||||| || | ||||||| ||||||||| ||||| |||||||||||| |||||| |
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|
| T |
14728597 |
aaacatacctgaagagtatcatttgatattgtgagagatttgacactaccaagtcgactcaatagctcaattgca |
14728671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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