View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14512_high_12 (Length: 304)
Name: NF14512_high_12
Description: NF14512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14512_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 69 - 285
Target Start/End: Complemental strand, 12418920 - 12418704
Alignment:
| Q |
69 |
tcacatcagttcaaagtcataagccttggcgttactgttcaatttttcaccaataccaactaaggttccaacacataccattacaagtatcataatggag |
168 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12418920 |
tcacatcagttcaaagaaataagccttggcgttactgttcaatttttcaccaataccaactaaggttccaacacataccattacaagtatcataatggag |
12418821 |
T |
|
| Q |
169 |
aatcatagttttttatcgagtgaattttgggaacctttggattttctgcataattatgaagaaatatttgtgtgaacaagttcgttattagcttaggcac |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12418820 |
aatcatagttttttatcgagtgaattttgggaacctttggattttctgcataattatgaagaaatatttgtgtgaacaagttcgttattagcttaggcac |
12418721 |
T |
|
| Q |
269 |
acggggagtttatagaa |
285 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12418720 |
acggggagtttatagaa |
12418704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 12419347 - 12419278
Alignment:
| Q |
1 |
ttgggccaaagaatttgcttggtgactaagacaaaagcacacnnnnnnnntctttaatgtcactcacatc |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
12419347 |
ttgggccaaagaatttgcttggtgactaagacaaaagcacacaaaaaaaatctttaatgtcactcacatc |
12419278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 12654794 - 12654838
Alignment:
| Q |
241 |
tgaacaagttcgttattagcttaggcacacggggagtttatagaa |
285 |
Q |
| |
|
|||||||||| |||||||||||||| ||| || |||||||||||| |
|
|
| T |
12654794 |
tgaacaagtttgttattagcttaggtacatggagagtttatagaa |
12654838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 15329118 - 15329046
Alignment:
| Q |
211 |
tttctgcataattatgaagaaatatttgtgtgaacaagttcgttattagcttaggcacacggggagtttatagaa |
285 |
Q |
| |
|
|||||||||||||||| ||||| || |||||| |||||| ||||||||||||| |||| || |||||||||||| |
|
|
| T |
15329118 |
tttctgcataattatgtagaaaaat--gtgtgatcaagtttgttattagcttagtcacatggagagtttatagaa |
15329046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University