View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14512_high_4 (Length: 447)

Name: NF14512_high_4
Description: NF14512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14512_high_4
NF14512_high_4
[»] chr4 (3 HSPs)
chr4 (7-429)||(45734892-45735313)
chr4 (34-168)||(45746179-45746313)
chr4 (220-429)||(45746367-45746569)


Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 7 - 429
Target Start/End: Original strand, 45734892 - 45735313
Alignment:
Q  7 aagaaaaaagaagaaagcttaatttcggcaggttgagggaattgaagactatgagatgacatttgcagaatcaagggaatttgtccaatctgaaggcagt 106  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45734892 aagaaaaaagaagaaagcttaattttggcaggttgagggaattgaagactatgagatgacatttgcagaatcaagggaatgtgtccaatctgaaggcagt 45734991  T
Q  107 actgattcttttgcttttcctgtgtaagtcaatcttatattatcaatcaatcctaatcgtcagtcgtctatgtgnnnnnnnttatattgnnnnnnncttt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||       ||||    
T  45734992 actgattcttttgcttttcctgtgtaagtcaatcttatattatcaatcaatcctaatcgtcagtcgtctatgtgaaaaaaattatattgtttttttcttt 45735091  T
Q  207 ggannnnnnnaaatatattgttaatcggtcattattgtcgtattcaaaacgttagatttcaatcataactagttttgggatttgttgatgtattatttta 306  Q
    |||       ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45735092 ggagggggg-aaatatattattaatcggtcattattgtcatattcaaaacgttagatttcaatcataactagttttgggatttgttgatgtattatttta 45735190  T
Q  307 cactaacgtctatcaaaatgaaactcatatataataatgggccatgtgcaaacatatatagaactttgttgttgcatgttgtcatttgtcaagtaccaga 406  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45735191 cactgacgtctatcaaaatgaaactcatatataataatgggccatgtgcaaacatatatagaactttgttgttgcatgttgtcatttgtcaagtactaga 45735290  T
Q  407 ttgtggtttttctttgcaaaaca 429  Q
    |||||||||||||||||||||||    
T  45735291 ttgtggtttttctttgcaaaaca 45735313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 34 - 168
Target Start/End: Original strand, 45746179 - 45746313
Alignment:
Q  34 gcaggttgagggaattgaagactatgagatgacatttgcagaatcaagggaatttgtccaatctgaaggcagtactgattcttttgcttttcctgtgtaa 133  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||    
T  45746179 gcaggttgagggaattgaagactatgagatgtcatttgcaaaatcaagggactctgtccaatctgaaggcagtactgattcttttgctttccctgtgtaa 45746278  T
Q  134 gtcaatcttatattatcaatcaatcctaatcgtca 168  Q
    ||||||||||||||||||||||||| |||||||||    
T  45746279 gtcaatcttatattatcaatcaatcataatcgtca 45746313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 220 - 429
Target Start/End: Original strand, 45746367 - 45746569
Alignment:
Q  220 tatattgttaatcggtcattattgtcgtattcaaaacgttagatttcaatcataactagttttgggatttgttgat-gtattattttacactaacgtcta 318  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||    
T  45746367 tatattgttaatcggtcattattgtcatattcaaaacgttagatttcaatcataactagttttgtgatttgttgatggtgttattttacactaacgtgta 45746466  T
Q  319 tcaaaatgaaactcatatataataatgggccatgtgc-aaacatatatagaactttgttgttgcatgttgtcatttgtcaagtaccagattgtggttttt 417  Q
    || |||| ||||||  |||||||||| | | |||||| ||||||||||||||||||| |||| ||||       ||||||||||| |||| |||||||||    
T  45746467 tctaaattaaactc--atataataatcgtctatgtgcaaaacatatatagaactttgctgttacatg-------ttgtcaagtactagatggtggttttt 45746557  T
Q  418 ctttgcaaaaca 429  Q
    ||||||||||||    
T  45746558 ctttgcaaaaca 45746569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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