View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14512_low_1 (Length: 680)

Name: NF14512_low_1
Description: NF14512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14512_low_1
NF14512_low_1
[»] chr5 (11 HSPs)
chr5 (19-670)||(15807444-15808095)
chr5 (331-516)||(41859542-41859727)
chr5 (331-527)||(42629498-42629694)
chr5 (334-527)||(9575310-9575503)
chr5 (330-491)||(42840417-42840578)
chr5 (410-510)||(1040119-1040219)
chr5 (331-386)||(42637359-42637414)
chr5 (418-524)||(42637224-42637330)
chr5 (331-388)||(40545121-40545178)
chr5 (332-392)||(40549282-40549342)
chr5 (332-392)||(42413999-42414059)
[»] chr8 (2 HSPs)
chr8 (334-591)||(3367655-3367912)
chr8 (591-663)||(3367529-3367598)
[»] chr2 (3 HSPs)
chr2 (98-309)||(25287071-25287282)
chr2 (443-524)||(16921102-16921183)
chr2 (331-392)||(44937800-44937861)
[»] chr7 (2 HSPs)
chr7 (331-591)||(45866864-45867124)
chr7 (331-384)||(42446349-42446402)
[»] chr1 (1 HSPs)
chr1 (48-183)||(17204357-17204497)
[»] scaffold0129 (2 HSPs)
scaffold0129 (331-386)||(10487-10542)
scaffold0129 (331-425)||(33521-33615)
[»] chr6 (1 HSPs)
chr6 (331-426)||(29131320-29131415)
[»] chr3 (2 HSPs)
chr3 (331-386)||(5162456-5162511)
chr3 (591-655)||(53691512-53691573)


Alignment Details
Target: chr5 (Bit Score: 648; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 19 - 670
Target Start/End: Complemental strand, 15808095 - 15807444
Alignment:
Q  19 gggtttatgttgatttttcaatgacacatatgatgcttgtgatcctggttctattgggatgcttaaggaggtttgatcaggatgctaaggtagttatatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15808095 gggtttatgttgatttttcaatgacacatatgatgcttgtgatcctggttctattgggatgcttaaggaggtttgatcaggatgctaaggtagttatatt 15807996  T
Q  119 ttatgtcttattttttgaactttagatttgttgtggttggttgatgcatgtgaaaatggattttatgtgaaaattgatttttggtgaaggattgagttgt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807995 ttatgtcttattttttgaactttagatttgttgtggttggttgatgcatgtgaaaatggattttatgtgaaaattgatttttggtgaaggattgagttgt 15807896  T
Q  219 gtgattgttgttgaaggcaataggattatagtcatgtaataaaattaaactgaagaaatatataggtagtagtagttgatatttatcaaaaattaaactg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15807895 gtgattgttgttgaaggcaataggattatagtcatgtaataaaattaaactgaagaaatatataggtagtagtagttgatgtttatcaaaaattaaactg 15807796  T
Q  319 aagaaatcaaaatttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807795 aagaaatcaaaatttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatc 15807696  T
Q  419 ctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgt 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807695 ctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgt 15807596  T
Q  519 taaaggtgactcatgttgccggataatgatttataaggaaagccttctaccgcttgaaagaaaaaacaattagttttattttactttctgctttgtgagc 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807595 taaaggtgactcatgttgccggataatgatttataaggaaagccttctaccgcttgaaagaaaaaacaattagttttattttactttctgctttgtgagc 15807496  T
Q  619 atcataatgttatggcaatacaccattactgatattggctatctgtgctcct 670  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807495 atcataatgttatggcaatacaccattactgatattggctatctgtgctcct 15807444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 331 - 516
Target Start/End: Complemental strand, 41859727 - 41859542
Alignment:
Q  331 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaattt 430  Q
    ||||| |||||| |||| |||||||||||| | ||||||||||||| |||||||||  |||||||||| ||| | |   || | | |||||||||| ||     
T  41859727 tttcatatatcagttttaggtgaagttgggattaaagagtcatggatcaaactcttcgttgtaggtccgttgtccgatgttaagcgtcctattggagttg 41859628  T
Q  431 gtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggt 516  Q
    ||||||| || ||||| || ||| | ||||||||||||||  |||||| |||| ||||||||||||||||||| ||||| ||||||    
T  41859627 gtaagaaaggagatatgtttttccggaaaaaggataatgaactagttttgtttaatttaagcacccagagaattgaagaccttggt 41859542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 331 - 527
Target Start/End: Complemental strand, 42629694 - 42629498
Alignment:
Q  331 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaattt 430  Q
    ||||| |||||||||||||||||||| ||  | || |||||||||| |||||| |||||||| ||||| ||| |  |  |||| |||||||||||| ||     
T  42629694 tttcatatatcaattttgggtgaagtcggagtgaaggagtcatggatcaaactttttattgtgggtccgttgacctgtgttgagcatcctattggagttg 42629595  T
Q  431 gtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtga 527  Q
    |||| || || ||||||| ||| | ||||||||||||  |  ||||||| ||| |||||| |||||| | ||| |||||||||||||| ||||||||    
T  42629594 gtaaaaatggtgatatatacttgaaaaaaaaggataacaaactagtttgttttaatttaatcacccaaaaaattgaagagcttggtgtcaaaggtga 42629498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 334 - 527
Target Start/End: Complemental strand, 9575503 - 9575310
Alignment:
Q  334 cacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaatttgta 433  Q
    ||||||||| |||||| | |||||||  | || |||||||||||||||||||| || |||| ||| |||       || | |||||||| ||| || |||    
T  9575503 cacatatcagttttggataaagttggaatgaaggagtcatggaccaaactcttcatcgtagatccgttgttctatgttaagcatcctataggagttggta 9575404  T
Q  434 agaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtga 527  Q
    | ||||| || |||||||| ||||||||||||||| | |||| | ||||| |||||| |||||||| ||| | |||||||||||||||||||||    
T  9575403 aaaagggtgacatattctttagaaaaaaggataatcaattagctaggtttaatttaatcacccagaaaattgtagagcttggtgttaaaggtga 9575310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 330 - 491
Target Start/End: Complemental strand, 42840578 - 42840417
Alignment:
Q  330 atttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaatt 429  Q
    ||||||||| ||||||||||||||| ||||  | ||||| |||||||| ||| |||||||||| ||||| || ||| || ||||  |||| ||||||       
T  42840578 atttcacatttcaattttgggtgaacttggtgtaaaagaatcatggactaaagtctttattgttggtcccttaccttgccttgagtatccaattggagca 42840479  T
Q  430 tgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaag 491  Q
     | ||||||||| |||||||  | | |||||| || |||||  ||| |||||||||||||||    
T  42840478 gggaagaagggcaatatattgattataaaaaaagacaatgaactagcttggtttgatttaag 42840417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 410 - 510
Target Start/End: Complemental strand, 1040219 - 1040119
Alignment:
Q  410 ttgaacatcctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaaga 509  Q
    |||| |||||||||||| |  |||||||||  ||||||||||| |||||||| ||  |||| |||||||||||| | |||||||| || ||||| |||||    
T  1040219 ttgagcatcctattggagtcggtaagaaggaagatatattctttagaaaaaacgacgatgaattagtttggtttaacttaagcactcaaagaattgaaga 1040120  T
Q  510 g 510  Q
    |    
T  1040119 g 1040119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 42637414 - 42637359
Alignment:
Q  331 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctt 386  Q
    |||||||||||||||||||||||||| ||| | || || |||||||||||||||||    
T  42637414 tttcacatatcaattttgggtgaagtcggggtgaaggaatcatggaccaaactctt 42637359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 524
Target Start/End: Complemental strand, 42637330 - 42637224
Alignment:
Q  418 cctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtg 517  Q
    ||||||||| |  ||||||| || ||||||||||| |||||||| ||| ||||  ||||||| ||| ||||||| || || |||||| || |  ||||||    
T  42637330 cctattggagtgagtaagaatggtgatatattctttagaaaaaacgatgatgaactagtttgctttaatttaagtacacaaagaatccaacaatttggtg 42637231  T
Q  518 ttaaagg 524  Q
    |||||||    
T  42637230 ttaaagg 42637224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 388
Target Start/End: Original strand, 40545121 - 40545178
Alignment:
Q  331 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactcttta 388  Q
    |||||||||||||||||||||||||||||  | || || ||||||| |||||| ||||    
T  40545121 tttcacatatcaattttgggtgaagttggtgtgaaggaatcatggatcaaacttttta 40545178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 332 - 392
Target Start/End: Original strand, 40549282 - 40549342
Alignment:
Q  332 ttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgt 392  Q
    ||||||||||||||||||||||||| ||  | || || ||||||| |||||||||| ||||    
T  40549282 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgt 40549342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 332 - 392
Target Start/End: Original strand, 42413999 - 42414059
Alignment:
Q  332 ttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgt 392  Q
    ||||||| ||||||||||| ||| ||||  | || ||||||||||| ||||||||||||||    
T  42413999 ttcacatttcaattttgggcgaatttggtgtaaaggagtcatggactaaactctttattgt 42414059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 3e-93; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 334 - 591
Target Start/End: Complemental strand, 3367912 - 3367655
Alignment:
Q  334 cacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaatttgta 433  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||| ||| | |    
T  3367912 cacatatcaattttaggtgaagttggggtcaaagagtcatggaccaaactctttattgtaggtcctatgcgtgacattgaacatcctattggtattggca 3367813  T
Q  434 agaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtgactcatg 533  Q
    |||||||||||||||||||||||||||| |||||||||  | |||| ||  ||||||||||| ||||||| |||||||||||||||||||||| ||  ||    
T  3367812 agaagggcgatatattcttcagaaaaaaagataatgagcaaatttgtttaaatttaagcacctagagaattgaagagcttggtgttaaaggtggcttgtg 3367713  T
Q  534 ttgccggataatgatttataaggaaagccttctaccgcttgaaagaaaaaacaattag 591  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3367712 ttgccggataatgatttataaggaaagccttctgccgcttgaaagaaaaaacaattag 3367655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 591 - 663
Target Start/End: Complemental strand, 3367598 - 3367529
Alignment:
Q  591 gttttattttactttctgctttgtgagcatcataatgttatggcaatacaccattactgatattggctatctg 663  Q
    ||||||||||| ||| | ||||||||||||   |||| |||||||||||| ||||||||||||||| ||||||    
T  3367598 gttttattttagtttttactttgtgagcat---aatgatatggcaatacatcattactgatattggttatctg 3367529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 8e-69; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 98 - 309
Target Start/End: Complemental strand, 25287282 - 25287071
Alignment:
Q  98 ggatgctaaggtagttatattttatgtcttattttttgaacttta-gatttgttgtggttggttgatgcatgtgaaaatggattttatgtgaaaattgat 196  Q
    ||||||||||||||||||| |||||||||| |||||| ||||||  ||||||||||||| |||||||| |||||  |||||||||||||||||||| |||    
T  25287282 ggatgctaaggtagttataatttatgtcttctttttttaactttttgatttgttgtggt-ggttgatgtatgtgttaatggattttatgtgaaaatcgat 25287184  T
Q  197 ttttggtgaaggattgagttgtgtgattgttgttgaaggcaataggattatagtcatgtaataaaattaaactgaagaaatatataggtagtagtagttg 296  Q
    ||| | ||||||||||| |||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  25287183 tttcgctgaaggattgaattgtgttattgttgtttaaggcaataggattagagtcatgtaataaaattaaactgaagaaatatataggcggtagtagttg 25287084  T
Q  297 atatttatcaaaa 309  Q
    |||||||||||||    
T  25287083 atatttatcaaaa 25287071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 443 - 524
Target Start/End: Original strand, 16921102 - 16921183
Alignment:
Q  443 atatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaagg 524  Q
    ||||||||||||||||| | ||||||||  |||| ||||||||||| |  ||||| |  || ||||||||||||||||||||    
T  16921102 atatattcttcagaaaagatgataatgaaatagtctggtttgatttgaatacccaaatgattgaagagcttggtgttaaagg 16921183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 392
Target Start/End: Complemental strand, 44937861 - 44937800
Alignment:
Q  331 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgt 392  Q
    |||||||||||||||||||||||| | ||  | ||||| |||||||| ||||||||| ||||    
T  44937861 tttcacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactctttgttgt 44937800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 4e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 331 - 591
Target Start/End: Original strand, 45866864 - 45867124
Alignment:
Q  331 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattggaattt 430  Q
    ||||||||||||||||| |||||| ||||  | || |||||||||| |||||| |||||||| ||| ||||| || |  | || ||||||||| |||||     
T  45866864 tttcacatatcaattttaggtgaaattggagtgaaggagtcatggatcaaactttttattgtgggttctttgtcttgtgtcgaccatcctattagaattg 45866963  T
Q  431 gtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtgactc 530  Q
    |||||| ||| ||||||||||| |||||| | ||| ||||  ||||||  ||| |||||||||| |||| ||| ||||||||||||||||||||| | ||    
T  45866964 gtaagacgggtgatatattctttagaaaagaagatgatgaactagtttcatttaatttaagcacacagaaaattgaagagcttggtgttaaaggttattc 45867063  T
Q  531 atgttgccggataatgatttataaggaaagccttctaccgcttgaaagaaaaaacaattag 591  Q
    |  ||||| ||||||  ||||||||||||||||||||||| |||  ||||  |||||||||    
T  45867064 actttgccagataatagtttataaggaaagccttctaccgattgccagaatcaacaattag 45867124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 384
Target Start/End: Original strand, 42446349 - 42446402
Alignment:
Q  331 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactc 384  Q
    |||||||||||||||||||||||| |||   |||| || |||||||||||||||    
T  42446349 tttcacatatcaattttgggtgaacttgctatcaaggaatcatggaccaaactc 42446402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 48 - 183
Target Start/End: Original strand, 17204357 - 17204497
Alignment:
Q  48 atgatgcttgtgatcctggttctattgggatgcttaaggagg--tttgatcaggatgctaaggtagttat-attt-tatgtcttattttttgaactt-ta 142  Q
    |||||| ||||| ||||||||||||||||||  ||||| |||  |||| ||||||||||||||||||||| |||| ||||||||| |||| |||||| |     
T  17204357 atgatgtttgtggtcctggttctattgggatttttaagaaggagtttggtcaggatgctaaggtagttatgatttgtatgtcttagttttggaacttgtt 17204456  T
Q  143 gatttgttgtggttggttgatgcatgtgaaaatggatttta 183  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  17204457 gatttgttgtggttggttgatgtatgtggaaatggatttta 17204497  T

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Target: scaffold0129 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 331 - 386
Target Start/End: Original strand, 10487 - 10542
Alignment:
Q  331 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctt 386  Q
    |||||||||||||||||||||||||||||  | || ||||| ||||| ||||||||    
T  10487 tttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactctt 10542  T

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Target: scaffold0129; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 425
Target Start/End: Complemental strand, 33615 - 33521
Alignment:
Q  331 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattgg 425  Q
    |||||||| || |||||||||||| ||||  | || ||||| ||||| |||||||||||| | || ||||| ||| |||| || |||||||||||    
T  33615 tttcacatttctattttgggtgaacttggtgtgaaggagtcttggactaaactctttattattgggcctttaccttgcatcgagcatcctattgg 33521  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 331 - 426
Target Start/End: Original strand, 29131320 - 29131415
Alignment:
Q  331 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgtaggtcctttgcctggcattgaacatcctattgga 426  Q
    |||||||||||||||||||||||| ||||  | ||||| || ||||||||  |||| ||||| || || ||| ||||| |||| | ||||||||||    
T  29131320 tttcacatatcaattttgggtgaatttggcataaaagaatcgtggaccaagatcttcattgttggaccattgtctggcgttgagcgtcctattgga 29131415  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 331 - 386
Target Start/End: Original strand, 5162456 - 5162511
Alignment:
Q  331 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctt 386  Q
    |||||||||||||||||||||||||||||  | || || ||||||| |||||||||    
T  5162456 tttcacatatcaattttgggtgaagttggtgtgaaggaatcatggatcaaactctt 5162511  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 591 - 655
Target Start/End: Original strand, 53691512 - 53691573
Alignment:
Q  591 gttttattttactttctgctttgtgagcatcataatgttatggcaatacaccattactgatattg 655  Q
    ||||||||||| ||||| ||||||||||||   | || ||| |||||||||||||||||||||||    
T  53691512 gttttattttagtttctactttgtgagcat---attggtattgcaatacaccattactgatattg 53691573  T

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