View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14512_low_12 (Length: 386)

Name: NF14512_low_12
Description: NF14512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14512_low_12
NF14512_low_12
[»] chr7 (4 HSPs)
chr7 (271-362)||(33602264-33602355)
chr7 (92-205)||(33602421-33602528)
chr7 (1-67)||(27656844-27656910)
chr7 (313-358)||(33602132-33602177)
[»] chr5 (2 HSPs)
chr5 (3-71)||(37606024-37606092)
chr5 (28-70)||(30891764-30891806)
[»] chr6 (1 HSPs)
chr6 (3-71)||(31559483-31559551)
[»] chr4 (1 HSPs)
chr4 (33-70)||(7453567-7453604)


Alignment Details
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 271 - 362
Target Start/End: Complemental strand, 33602355 - 33602264
Alignment:
Q  271 catgaatggtgaatccgaaattggtaagtgtttattatttgcttgtagttttggatttggaaaatcaacgtaacagagcaatttcgttttag 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33602355 catgaatggtgaatccgaaattggtaagtgtttattatttgcttgtagttttggatctggaaaatcaacgtaacagagcaatttcgttttag 33602264  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 92 - 205
Target Start/End: Complemental strand, 33602528 - 33602421
Alignment:
Q  92 aaaaacatatttaatcgtttaatatttcatttcactatttcgctatttgccagctcatacttctaaccgtttcttattcacttttgccgccatataacaa 191  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33602528 aaaaacatatttaatcgtttaatatttcatttcat------gctatttgccagctcatacttctaatcgtttcttattcacttttgccgccatataacaa 33602435  T
Q  192 accatatttcattt 205  Q
    ||||||||||||||    
T  33602434 accatatttcattt 33602421  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 27656910 - 27656844
Alignment:
Q  1 atataagtattgagtaatagtgtatggtgtcatttttgtgtttgtatttttgtgtttacttatcatt 67  Q
    |||||||||||||| || ||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  27656910 atataagtattgaggaacagtctatggtatcatttttgtgtttgtatttttgtgtttacttatcatt 27656844  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 33602177 - 33602132
Alignment:
Q  313 ttgtagttttggatttggaaaatcaacgtaacagagcaatttcgtt 358  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  33602177 ttgtagttttggatctggaaaatcaacgtaacagagcaatttcgtt 33602132  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 37606024 - 37606092
Alignment:
Q  3 ataagtattgagtaatagtgtatggtgtcatttttgtgtttgtatttttgtgtttacttatcattcctg 71  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  37606024 ataagtattgagtaacagtgtatggtgtcatatttgtgtttgtattattgtgtttacttatcattcctg 37606092  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 30891806 - 30891764
Alignment:
Q  28 tgtcatttttgtgtttgtatttttgtgtttacttatcattcct 70  Q
    |||| |||||||||||||||||||||||| |||||||||||||    
T  30891806 tgtcgtttttgtgtttgtatttttgtgttcacttatcattcct 30891764  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 31559551 - 31559483
Alignment:
Q  3 ataagtattgagtaatagtgtatggtgtcatttttgtgtttgtatttttgtgtttacttatcattcctg 71  Q
    ||||||||||||||| ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||    
T  31559551 ataagtattgagtaacagtgtatggtgtcatatttatgtttgtattattgtgtttacttatcattcctg 31559483  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 7453604 - 7453567
Alignment:
Q  33 tttttgtgtttgtatttttgtgtttacttatcattcct 70  Q
    |||||||||||||||||||||||| |||||||||||||    
T  7453604 tttttgtgtttgtatttttgtgttcacttatcattcct 7453567  T

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