View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14512_low_13 (Length: 368)
Name: NF14512_low_13
Description: NF14512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14512_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 32856026 - 32856328
Alignment:
| Q |
1 |
caaaaagaaaatatcttcaaagcactgtaactgttctgcactctgtggctactaccatcacccaataaatcatctctctttggaaagagatcacacttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32856026 |
caaaaagaaaatatcttcaaagcactgtaactgttctgcactctgtggctactaccgtcacccaataaatcatctctctttggaaagaaatcacacttta |
32856125 |
T |
|
| Q |
101 |
atttctgcacaatttatgtagaaacagatacactttttaatctatttctaatctaacattttccccaaattagaaaccacggatgagagagggttggata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32856126 |
atttctgcacaatttatgtagaaacagatacactttttaatctatttctaatctaacattttccccaaattagaaaccacggatgagagagggttggata |
32856225 |
T |
|
| Q |
201 |
gctcttgctttgagttaagagagaaagagttgggggttctgggttcgaacgtggacaaagaaatagatctaaatttaacaactaattactaacctttgtc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32856226 |
gctcttgctttgagttaagagagaaagagttgggggttctgggttcgaacgtggacagagaaatagatctaaatttaacaactaattactaacctttgtc |
32856325 |
T |
|
| Q |
301 |
att |
303 |
Q |
| |
|
||| |
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|
| T |
32856326 |
att |
32856328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 32850720 - 32850766
Alignment:
| Q |
105 |
ctgcacaatttatgtagaaacagatacactttttaatctatttctaa |
151 |
Q |
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| T |
32850720 |
ctgcacaatttatgcagaaacagctacactttttcatctatttctaa |
32850766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 304
Target Start/End: Complemental strand, 10223426 - 10223394
Alignment:
| Q |
272 |
aatttaacaactaattactaacctttgtcatta |
304 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
10223426 |
aatttaacaactaattactaacatttgtcatta |
10223394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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