View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14512_low_14 (Length: 365)
Name: NF14512_low_14
Description: NF14512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14512_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 4 - 348
Target Start/End: Original strand, 38184626 - 38184970
Alignment:
| Q |
4 |
caccaccaccagacaaagtatcattaggatctttaccgcccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaacatcaac |
103 |
Q |
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| T |
38184626 |
caccaccaccagacgaagtatcattaggatctttaccgcccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaacatcaac |
38184725 |
T |
|
| Q |
104 |
ggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttcatctagaacttgaatttgttctttgaaagattga |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38184726 |
ggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactgtagggttggtttcttcatctagaacttgaatttgttctttgaaagatcga |
38184825 |
T |
|
| Q |
204 |
gtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcat |
303 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184826 |
gtagcgatagtatatatatttgaagataataaaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcat |
38184925 |
T |
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| Q |
304 |
cctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaat |
348 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38184926 |
cctttgatttgtttgtgatgtagtcaccatgttcatgaaagtaat |
38184970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 4 - 348
Target Start/End: Original strand, 38179957 - 38180301
Alignment:
| Q |
4 |
caccaccaccagacaaagtatcattaggatctttaccgcccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaacatcaac |
103 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38179957 |
caccaccactagacgaagtatcattaggatctttaccgcccaagaaagtatatggaatcaatggtccgattggtatcattttgatcttaccaacgtcaac |
38180056 |
T |
|
| Q |
104 |
ggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttcatctagaacttgaatttgttctttgaaagattga |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38180057 |
ggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttcatatagaacttgaatttgttctttgaaagattga |
38180156 |
T |
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| Q |
204 |
gtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcat |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180157 |
gtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcat |
38180256 |
T |
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| Q |
304 |
cctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaat |
348 |
Q |
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| T |
38180257 |
cctttgatttgtttgtgacgtagtcaccatgctcatgaaagtaat |
38180301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 43 - 348
Target Start/End: Original strand, 38170182 - 38170487
Alignment:
| Q |
43 |
ccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgtt |
142 |
Q |
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||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||| || | ||||||||| ||||||||||| |
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| T |
38170182 |
ccaagaaagcagatggaatcaacggtccgatgggtatcattttgatcttaccaacatcaactttattcagtgcatccagttcaaactcctcaacggtgtt |
38170281 |
T |
|
| Q |
143 |
aacaagtactttagggttggtttcttcat-ctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaaga |
241 |
Q |
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||||||||| | |||||| ||||||||| | | |||| ||||||| ||||||| |||| || ||| | ||||||| ||||||||| ||||||||||| |
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| T |
38170282 |
cacaagtactcttgggttgatttcttcattcaacaact-gaatttgctctttgagagatggaagagcaaaagtgtatgtatttgaagccaataaaaaaga |
38170380 |
T |
|
| Q |
242 |
gggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatga |
341 |
Q |
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||||||||| || |||| |||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
38170381 |
gggaaggtcgcggcttttaagagagaatgacaatcccggtaatgatattaaacacgtttcatcctttgatttgtttgtgatgtagtcaccgtgttcatga |
38170480 |
T |
|
| Q |
342 |
aagtaat |
348 |
Q |
| |
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||||||| |
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| T |
38170481 |
aagtaat |
38170487 |
T |
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Back To:
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