View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14512_low_15 (Length: 317)
Name: NF14512_low_15
Description: NF14512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14512_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 33517083 - 33517387
Alignment:
| Q |
16 |
attaatacggttttgtacaaactaaaatttttaatattttcttaccatcatggatttcgtacaagcttagaattgcttcatgggcatatacgacgtaacc |
115 |
Q |
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| T |
33517083 |
attaatacggttttgtacaaactaaaatttttaatattttcttaccatcatggattccgtacaagcttagaattgcttcaagagcatatacgacgtaagc |
33517182 |
T |
|
| Q |
116 |
aaaagttgttgatttttggttgtcaaaaatatcattgcacta-------atgctggtttttggcctacatatatgttggatcccaaaagatcaagtaact |
208 |
Q |
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| T |
33517183 |
aaaagttgttgattttttattgtcaaaaatatcattgcactatcttttaatgctggtttttggcctacatatatgttggatcccaaaagatcaagtaact |
33517282 |
T |
|
| Q |
209 |
tcaagaaactaaaatactcatatacttgattaagtgtgttgatattattgtatatatgcttaaccaatattagaaactcttctaaagtctagctctctat |
308 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33517283 |
tcaagaaactaaaatactcatatacttgataaagtgtgttgatattattgtatatatgcttaaccaatattagaaactcttccaaagtctagctctctat |
33517382 |
T |
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| Q |
309 |
tcatc |
313 |
Q |
| |
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||||| |
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| T |
33517383 |
tcatc |
33517387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 157 - 304
Target Start/End: Original strand, 33514809 - 33514953
Alignment:
| Q |
157 |
aatgctggtttttggcctacatatatgttggatcccaaaagatcaagtaacttcaagaaactaaaa-tactcatatacttgattaagtgtgttgatatta |
255 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||| | || ||| |||||||||||||| |||||||| |||||| |||| |||||||||| |
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| T |
33514809 |
aatgctagtttttggcctaaatatatgttggatcccaaaagttaaac-aacatcaagaaactaaaaatactcata--cttgat-aagtttgttgatattg |
33514904 |
T |
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| Q |
256 |
ttgtatatatgcttaaccaatattagaaactcttctaaagtctagctct |
304 |
Q |
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| T |
33514905 |
ttgtatatatgcttaaccaatattagaaactcttccaaagtctaactct |
33514953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 27810525 - 27810620
Alignment:
| Q |
47 |
taatattttcttaccatcatggatttcgtacaagcttagaattgcttcatgggcatatacgacgtaaccaaaagttgttgatttttggttgtcaaaa |
143 |
Q |
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|||||||||||||||| | |||||| || |||||||||||||| ||||||| |||||||| |||| ||||||||||||||||||| ||||||||| |
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| T |
27810525 |
taatattttcttaccaccttggattctgtgcaagcttagaattgtttcatggacatatacg-tgtaagcaaaagttgttgatttttgattgtcaaaa |
27810620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 37518824 - 37518704
Alignment:
| Q |
16 |
attaatacggttttg--tacaaactaaaattttta--atattttcttaccatcatggatttcgtacaagcttagaattgcttcatgggcatatacgacgt |
111 |
Q |
| |
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||||||||||||||| ||||||||||| |||||| |||||||||||||| | |||||| | | |||| ||||||||| || |||| ||||| || || |
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| T |
37518824 |
attaatacggttttgagtacaaactaaattttttacaatattttcttaccaccttggattccattcaagtttagaattgttttatggacatatgcggtgt |
37518725 |
T |
|
| Q |
112 |
aaccaaaagttgttgattttt |
132 |
Q |
| |
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|| ||||| |||||||||||| |
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| T |
37518724 |
aagcaaaaattgttgattttt |
37518704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 37523040 - 37522920
Alignment:
| Q |
16 |
attaatacggttttg--tacaaactaaaattttta--atattttcttaccatcatggatttcgtacaagcttagaattgcttcatgggcatatacgacgt |
111 |
Q |
| |
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||||||||||||||| ||||||||||| |||||| |||||||||||||| | |||||| | | |||| ||||||||| || |||| ||||| || || |
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| T |
37523040 |
attaatacggttttgagtacaaactaaattttttacaatattttcttaccaccttggattccattcaagtttagaattgttttatggacatatgcggtgt |
37522941 |
T |
|
| Q |
112 |
aaccaaaagttgttgattttt |
132 |
Q |
| |
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|| ||||| |||||||||||| |
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| T |
37522940 |
aagcaaaaattgttgattttt |
37522920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 153
Target Start/End: Original strand, 25632410 - 25632518
Alignment:
| Q |
43 |
tttttaatattttcttaccatcatggatttcgtacaagcttagaattgcttcatgggcatatacgacgtaaccaaaagttgttgatttttggttgtcaaa |
142 |
Q |
| |
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|||||||||||||||||||| | |||||| | | |||| ||| |||||||||| ||||||||| |||| |||| ||||||||||| |||||||| | |
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| T |
25632410 |
tttttaatattttcttaccaccttggattccatgcaagtttatgattgcttcat-ggcatatacagtgtaagcaaaggttgttgatttctggttgtc-at |
25632507 |
T |
|
| Q |
143 |
aatatcattgc |
153 |
Q |
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||||||||||| |
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| T |
25632508 |
aatatcattgc |
25632518 |
T |
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