View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14512_low_18 (Length: 239)
Name: NF14512_low_18
Description: NF14512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14512_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 21706779 - 21706984
Alignment:
| Q |
19 |
gaattttgttgatatctgccagggttataagttacaggctgtgaaacttggacgactcaaaattgatgaatgccccaaagtttctcaaagtttgaatgca |
118 |
Q |
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| T |
21706779 |
gaatttttttgatatctgccagggttataagttacaggctgtgaaacttggacgactcgaaattgatgaatgccccaaagtttctcaaagtttgaatgca |
21706878 |
T |
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| Q |
119 |
attcaggtgacataaaagagcttttatttgcacctttagtaaagaatccaaatacatttttattttaattttgaaagataaatgttactaaaattttgaa |
218 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21706879 |
attcaggtgacataaaagagcttttatttgcacaatcagtaaagaatccaaatacatttttattttaattttgaaagataaatgttactaaaattttgaa |
21706978 |
T |
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| Q |
219 |
tatatt |
224 |
Q |
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|||||| |
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| T |
21706979 |
tatatt |
21706984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 21712676 - 21712523
Alignment:
| Q |
22 |
ttttgttgatatctgccagggttataagttacaggctgtgaaacttggacgactcaaaattgatgaatgccccaaagtttctcaaagtttgaatgcaatt |
121 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||||| || | |||| || |||||||||||||| || ||| |||| |||| | |||| |
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| T |
21712676 |
ttttgttcatatctgccagggttgtaagttacaggctgtgaaacttcaacaaatcaacatatatgaatgccccaaaattgctccaagtgtgaaagaaatt |
21712577 |
T |
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| Q |
122 |
caggtgacataaaagagcttttatttgcacctttagtaaagaatccaaatacatt |
176 |
Q |
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||||||||| ||||||| |||||||||||| || ||||||||||| ||||||||| |
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| T |
21712576 |
caggtgaca-aaaagagtttttatttgcacattcagtaaagaatctaaatacatt |
21712523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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