View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14512_low_3 (Length: 623)
Name: NF14512_low_3
Description: NF14512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14512_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-141; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 13558055 - 13558360
Alignment:
| Q |
17 |
aatattacggtagtagattccaccattgcaacaggtaaataaagtttatttttatccaattcaatttaagttattgaattttaataacacaaagcattca |
116 |
Q |
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| T |
13558055 |
aatattacggtagtagattccaccattgcaacaggtaaataaagtttatttttatccaattcaatttaagttattgaattttaataacacaaagcattca |
13558154 |
T |
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| Q |
117 |
ataatgtttttcttnnnnnnnntaatcaatactctttcgtcacaacatgcatgagtttaaaatcacatgtcatactcataactatgtggaaatatatgtc |
216 |
Q |
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| T |
13558155 |
ataatgtttttcttaaaaaaaataatcaatactctt-cggcacaacatgcatgagtttaaaatcacatgtcatactcataactatgtggaaatatatgtc |
13558253 |
T |
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| Q |
217 |
tatattcatgtctaaaatattttgcattgatagtaaatatagattacatacatataaaaataatatacatgacattgtgaattgtataatttctttttaa |
316 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
13558254 |
tatattcatgtctaaaatatttcgcattgatagtaaatatagattacattcatataaaaatattttacatgacattgtgaattgtataatttctttttaa |
13558353 |
T |
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| Q |
317 |
gtggaag |
323 |
Q |
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| T |
13558354 |
gtggaag |
13558360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 487 - 604
Target Start/End: Original strand, 13558562 - 13558679
Alignment:
| Q |
487 |
tcttattgtctatgtgcaattataaattgagttgcttttcttgtaagcaggtgatgattgtattgccgttaatgggggatcctcttacatctatgctact |
586 |
Q |
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| T |
13558562 |
tcttattgtatatgtgcaattataaattgagttgcttttcttgtaagcaggtgatgattgtattgccgttaatgggggatcctcttacatctatgctact |
13558661 |
T |
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| Q |
587 |
cgtgttgcatgtggtcca |
604 |
Q |
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| T |
13558662 |
cgtgttgcatgtggtcca |
13558679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 381 - 428
Target Start/End: Original strand, 13558402 - 13558449
Alignment:
| Q |
381 |
aaacattaggtttaaatgttaatgttttttcatacaatgataagtatt |
428 |
Q |
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| T |
13558402 |
aaacattaggtttaaatgttaatgttttttcatacaatgataggtatt |
13558449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 578
Target Start/End: Original strand, 32924748 - 32924829
Alignment:
| Q |
497 |
tatgtgcaattataaattgagttgcttttcttgtaagcaggtgatgattgtattgccgttaatgggggatcctcttacatct |
578 |
Q |
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| T |
32924748 |
tatgtgcaattttaaaatgagttggttttcttataaataggtgatgattgtattgccatcaatggtggctcctcttatatct |
32924829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 600
Target Start/End: Complemental strand, 11658557 - 11658464
Alignment:
| Q |
507 |
tataaattgagttgcttttcttgtaagcaggtgatgattgtattgccgttaatgggggatcctcttacatctatgctactcgtgttgcatgtgg |
600 |
Q |
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| T |
11658557 |
tataaaatgagttgactttcgtataaacaggtgatgattgtattgccgtcaaagaaggttcctcttacatcagcgctactcgtattgcttgtgg |
11658464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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