View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14512_low_4 (Length: 552)
Name: NF14512_low_4
Description: NF14512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14512_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 18 - 544
Target Start/End: Complemental strand, 8437297 - 8436771
Alignment:
| Q |
18 |
ttatggtatggcatttgacaaacctctctggtgaacccattacaatatagctagctgtaaggttaagagcttcaccttcctttaaatggggatcaagtta |
117 |
Q |
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| T |
8437297 |
ttatggtatggcatttgacaaacctccctggtgaacccattacaatatagctagctgtaaggttaagagcttcaccttcctttaaatggggatcaaatta |
8437198 |
T |
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| Q |
118 |
ggaatccaagacgtatacacatcaacaaattgtccatagtagaccacaccttcctgccaaagctgcaccaaaccaacacttgcagatcattctccaaacc |
217 |
Q |
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| T |
8437197 |
ggaatccaagacgtatacacatcaacaaattgtccatagtagaccacaccttcctgccaaagctgcaccaaaccaacacttgcagatcattctccaaacc |
8437098 |
T |
|
| Q |
218 |
atcttcacaaaaatagcaata-tttggggcattgaattctacgaatttgaagtctcactctagtttgtaagcaccctcgactaattcttgaatttaagtt |
316 |
Q |
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| T |
8437097 |
atcttcacaaaaatagcaatattttggggcattgaattctacgaatttgaagtctcactctagtttgtaagcaccctcgactaattcttgaatttaagtt |
8436998 |
T |
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| Q |
317 |
acgaaccttaaggggtactttaacacaccaaagcctcttccaatctcccaacacatgatattggttaccattgaaaaacttctctaaataaagtggatac |
416 |
Q |
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| T |
8436997 |
acgaaccttaaggggtactttaacacaccaaagcctcttccaatctcccaacacatgatattggttaccattcaaaaacttctctaaataaagtggatac |
8436898 |
T |
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| Q |
417 |
aggaacttgacggtgtactttacactagaatcggcagtccaaaagagttggtcattaaccaaaaaatttctagagacgaaattggagtatcttctcgacc |
516 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8436897 |
aggaacttgacggtgtac-ttacactagaatcggcagtccaaaagagttggtcattaaccaagaaatttctagagacgaaattggagtatcttctcgacc |
8436799 |
T |
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| Q |
517 |
acatccaaagaaaagacattattgatga |
544 |
Q |
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| T |
8436798 |
acatccaaagaaaagacattattgatga |
8436771 |
T |
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