View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14512_low_5 (Length: 534)
Name: NF14512_low_5
Description: NF14512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14512_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Complemental strand, 6222589 - 6222072
Alignment:
| Q |
1 |
acacaccaaaccaaaccaaaaatctcgtagtaacaaaaacatgaagaactgggttcgaggtaagatgctaggtagtggcaccttcgccaccgtcaactta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6222589 |
acacaccaaaccaaaccaaaaatctcgtagtatcaaaaacatgaagaactgggttcgaggtaagatgctaggtagtggcaccttcgccaccgtcaactta |
6222490 |
T |
|
| Q |
101 |
gccacacacccacagaattccggtatctttccgtctctcaccgccgtcaaaacctctgatacttacggctcccattctctcataaacgagaaacaaatac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6222489 |
gccacacacccacagaattccggtatctttccgtctctcaccgcagtcaaaacctctgatacttacggctcccattttctcataaacgagaaacaaatac |
6222390 |
T |
|
| Q |
201 |
ttgaaagtttaggatcatccccacatattattaagtattttggtcatgatcaaactttcgaaaatggtgaagagtgttataatatttttctagaatatgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6222389 |
ttgaaagtttaggatcatccccacatattattaagtattttggtcatgatcaaactttcgaaaatggtgaagagtgttataatatttttctagaatatgc |
6222290 |
T |
|
| Q |
301 |
tgctggcggtactctctccgatcaactcaagaatcatggtggtaagttaccagagaatctcattcggcgttacacaagatctgtcgttcaaggactcaaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6222289 |
tgctggcggtactctctccgatcaactcaagaatcatggtggtaagttaccagagaatctcgttcggcgttacacaagatcagtcgttcaaggactcaaa |
6222190 |
T |
|
| Q |
401 |
catgttcatgaaaatggttttgttcactgcgatgtgaagctacaaaacattcttgtatttgagaatgacgaagttaagatttcggattttggccttgcta |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6222189 |
catgttcatgaaaatggttttgttcactgcgatgtgaagctacaaaacattcttgtatttgagaatgacgaagttaagatttcggattttggccttgcta |
6222090 |
T |
|
| Q |
501 |
aggagaaaggtctaaaac |
518 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
6222089 |
aggagaaaggtctaaaac |
6222072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 184 - 346
Target Start/End: Complemental strand, 6233182 - 6233020
Alignment:
| Q |
184 |
aaacgagaaacaaatacttgaaagtttaggatcatccccacatattattaagtattttggtcatgatcaaactttcgaaaatggtgaagagtgttataat |
283 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||| |||| |||| |||||| || || ||||| | ||||| | |||||||| ||| ||| |
|
|
| T |
6233182 |
aaacgagaaacaaatactcgatcgtttaggatcatccccacatgttatcaagtgttttggccaagacaaaactgttgaaaacgatgaagagtattacaat |
6233083 |
T |
|
| Q |
284 |
atttttctagaatatgctgctggcggtactctctccgatcaactcaagaatcatggtggtaag |
346 |
Q |
| |
|
|||||||||||||| ||| || || |||||||||||||||||| |||| |||||||||||| |
|
|
| T |
6233082 |
atttttctagaatacgctagcggtggaactctctccgatcaactcgagaaacatggtggtaag |
6233020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University