View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14512_low_7 (Length: 447)

Name: NF14512_low_7
Description: NF14512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14512_low_7
NF14512_low_7
[»] chr4 (3 HSPs)
chr4 (7-429)||(45734892-45735313)
chr4 (34-168)||(45746179-45746313)
chr4 (220-429)||(45746367-45746569)


Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 7 - 429
Target Start/End: Original strand, 45734892 - 45735313
Alignment:
Q  7 aagaaaaaagaagaaagcttaatttcggcaggttgagggaattgaagactatgagatgacatttgcagaatcaagggaatttgtccaatctgaaggcagt 106  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45734892 aagaaaaaagaagaaagcttaattttggcaggttgagggaattgaagactatgagatgacatttgcagaatcaagggaatgtgtccaatctgaaggcagt 45734991  T
Q  107 actgattcttttgcttttcctgtgtaagtcaatcttatattatcaatcaatcctaatcgtcagtcgtctatgtgnnnnnnnttatattgnnnnnnncttt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||       ||||    
T  45734992 actgattcttttgcttttcctgtgtaagtcaatcttatattatcaatcaatcctaatcgtcagtcgtctatgtgaaaaaaattatattgtttttttcttt 45735091  T
Q  207 ggannnnnnnaaatatattgttaatcggtcattattgtcgtattcaaaacgttagatttcaatcataactagttttgggatttgttgatgtattatttta 306  Q
    |||       ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45735092 ggagggggg-aaatatattattaatcggtcattattgtcatattcaaaacgttagatttcaatcataactagttttgggatttgttgatgtattatttta 45735190  T
Q  307 cactaacgtctatcaaaatgaaactcatatataataatgggccatgtgcaaacatatatagaactttgttgttgcatgttgtcatttgtcaagtaccaga 406  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45735191 cactgacgtctatcaaaatgaaactcatatataataatgggccatgtgcaaacatatatagaactttgttgttgcatgttgtcatttgtcaagtactaga 45735290  T
Q  407 ttgtggtttttctttgcaaaaca 429  Q
    |||||||||||||||||||||||    
T  45735291 ttgtggtttttctttgcaaaaca 45735313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 34 - 168
Target Start/End: Original strand, 45746179 - 45746313
Alignment:
Q  34 gcaggttgagggaattgaagactatgagatgacatttgcagaatcaagggaatttgtccaatctgaaggcagtactgattcttttgcttttcctgtgtaa 133  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||    
T  45746179 gcaggttgagggaattgaagactatgagatgtcatttgcaaaatcaagggactctgtccaatctgaaggcagtactgattcttttgctttccctgtgtaa 45746278  T
Q  134 gtcaatcttatattatcaatcaatcctaatcgtca 168  Q
    ||||||||||||||||||||||||| |||||||||    
T  45746279 gtcaatcttatattatcaatcaatcataatcgtca 45746313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 220 - 429
Target Start/End: Original strand, 45746367 - 45746569
Alignment:
Q  220 tatattgttaatcggtcattattgtcgtattcaaaacgttagatttcaatcataactagttttgggatttgttgat-gtattattttacactaacgtcta 318  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||    
T  45746367 tatattgttaatcggtcattattgtcatattcaaaacgttagatttcaatcataactagttttgtgatttgttgatggtgttattttacactaacgtgta 45746466  T
Q  319 tcaaaatgaaactcatatataataatgggccatgtgc-aaacatatatagaactttgttgttgcatgttgtcatttgtcaagtaccagattgtggttttt 417  Q
    || |||| ||||||  |||||||||| | | |||||| ||||||||||||||||||| |||| ||||       ||||||||||| |||| |||||||||    
T  45746467 tctaaattaaactc--atataataatcgtctatgtgcaaaacatatatagaactttgctgttacatg-------ttgtcaagtactagatggtggttttt 45746557  T
Q  418 ctttgcaaaaca 429  Q
    ||||||||||||    
T  45746558 ctttgcaaaaca 45746569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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