View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14512_low_9 (Length: 403)

Name: NF14512_low_9
Description: NF14512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14512_low_9
NF14512_low_9
[»] chr8 (12 HSPs)
chr8 (14-380)||(7555561-7555941)
chr8 (101-208)||(11394180-11394287)
chr8 (101-184)||(24793952-24794035)
chr8 (45-208)||(43253557-43253720)
chr8 (90-202)||(12134518-12134630)
chr8 (87-181)||(4987924-4988018)
chr8 (95-187)||(7452547-7452639)
chr8 (101-208)||(44082844-44082951)
chr8 (102-157)||(36157359-36157414)
chr8 (87-157)||(2872377-2872447)
chr8 (87-208)||(16420842-16420963)
chr8 (119-183)||(23680381-23680445)
[»] chr7 (21 HSPs)
chr7 (65-386)||(17855901-17856218)
chr7 (100-215)||(18671370-18671485)
chr7 (101-208)||(19728688-19728795)
chr7 (89-208)||(41339714-41339833)
chr7 (64-205)||(47105445-47105586)
chr7 (89-208)||(5326959-5327078)
chr7 (101-215)||(31025328-31025442)
chr7 (101-208)||(8771635-8771742)
chr7 (101-208)||(18767609-18767716)
chr7 (87-173)||(45943038-45943124)
chr7 (101-184)||(13554034-13554117)
chr7 (87-181)||(25924258-25924351)
chr7 (119-181)||(27941353-27941415)
chr7 (87-157)||(33796250-33796320)
chr7 (100-178)||(34458020-34458098)
chr7 (95-187)||(15653558-15653650)
chr7 (96-208)||(36227982-36228094)
chr7 (309-360)||(36227834-36227885)
chr7 (307-386)||(41339928-41340007)
chr7 (104-181)||(45992780-45992857)
chr7 (95-151)||(43105506-43105562)
[»] chr6 (20 HSPs)
chr6 (65-215)||(33804946-33805095)
chr6 (65-210)||(4474863-4475008)
chr6 (45-206)||(13085684-13085845)
chr6 (100-215)||(9565567-9565682)
chr6 (106-181)||(11468787-11468862)
chr6 (100-187)||(25318054-25318141)
chr6 (100-187)||(26205548-26205635)
chr6 (256-362)||(4478340-4478446)
chr6 (83-215)||(23065871-23066007)
chr6 (77-157)||(503415-503495)
chr6 (87-181)||(19255827-19255921)
chr6 (87-181)||(33640105-33640199)
chr6 (87-208)||(15674012-15674133)
chr6 (87-208)||(23347299-23347420)
chr6 (100-208)||(24378977-24379085)
chr6 (87-157)||(8264432-8264502)
chr6 (100-208)||(21549048-21549156)
chr6 (307-389)||(11468972-11469054)
chr6 (119-184)||(18588571-18588636)
chr6 (101-181)||(5085885-5085965)
[»] chr1 (15 HSPs)
chr1 (65-215)||(16873317-16873467)
chr1 (64-212)||(20795832-20795980)
chr1 (64-208)||(49264796-49264940)
chr1 (95-335)||(34853350-34853586)
chr1 (87-152)||(30970496-30970561)
chr1 (64-205)||(39430442-39430583)
chr1 (100-187)||(48265571-48265658)
chr1 (87-181)||(25504852-25504946)
chr1 (110-182)||(17827512-17827584)
chr1 (87-156)||(32353181-32353250)
chr1 (87-208)||(48073263-48073384)
chr1 (95-154)||(36929362-36929421)
chr1 (95-157)||(36305979-36306041)
chr1 (104-157)||(7396594-7396647)
chr1 (107-156)||(37530773-37530822)
[»] scaffold0308 (1 HSPs)
scaffold0308 (65-374)||(17311-17615)
[»] chr5 (14 HSPs)
chr5 (65-374)||(35122376-35122681)
chr5 (65-374)||(30509717-30510020)
chr5 (65-374)||(30550057-30550360)
chr5 (101-208)||(19513297-19513404)
chr5 (101-208)||(4400078-4400185)
chr5 (87-187)||(587703-587803)
chr5 (101-208)||(11817991-11818098)
chr5 (101-208)||(38357668-38357775)
chr5 (95-187)||(10486773-10486865)
chr5 (85-173)||(29094374-29094462)
chr5 (87-156)||(34481134-34481203)
chr5 (101-181)||(11574553-11574633)
chr5 (120-181)||(22095109-22095170)
chr5 (101-157)||(3727282-3727338)
[»] chr3 (19 HSPs)
chr3 (25-386)||(54439771-54440128)
chr3 (100-215)||(18368780-18368895)
chr3 (101-208)||(14867617-14867724)
chr3 (122-208)||(10867944-10868030)
chr3 (66-156)||(26010213-26010303)
chr3 (101-208)||(20197928-20198034)
chr3 (101-208)||(45684377-45684484)
chr3 (87-173)||(6176345-6176431)
chr3 (87-208)||(2813332-2813453)
chr3 (95-208)||(36709105-36709218)
chr3 (87-157)||(9379284-9379354)
chr3 (45-143)||(10867845-10867943)
chr3 (87-173)||(23601960-23602046)
chr3 (87-156)||(25872992-25873061)
chr3 (87-208)||(29309595-29309716)
chr3 (100-208)||(42675270-42675378)
chr3 (89-157)||(46908552-46908620)
chr3 (100-215)||(15481582-15481697)
chr3 (95-187)||(49731785-49731877)
[»] chr4 (20 HSPs)
chr4 (112-208)||(42953326-42953422)
chr4 (45-187)||(4524478-4524620)
chr4 (87-213)||(4640506-4640631)
chr4 (101-172)||(9992706-9992777)
chr4 (101-181)||(19114637-19114717)
chr4 (87-181)||(19647896-19647990)
chr4 (87-181)||(49926125-49926219)
chr4 (95-209)||(53810036-53810150)
chr4 (95-187)||(8654926-8655018)
chr4 (101-181)||(29553599-29553679)
chr4 (87-208)||(2631585-2631706)
chr4 (101-181)||(23657596-23657676)
chr4 (100-157)||(47541125-47541182)
chr4 (95-187)||(7663092-7663184)
chr4 (87-150)||(8486871-8486934)
chr4 (87-173)||(23873343-23873429)
chr4 (143-205)||(43516565-43516627)
chr4 (87-173)||(55298807-55298893)
chr4 (87-208)||(20675209-20675330)
chr4 (100-156)||(26694128-26694184)
[»] chr2 (19 HSPs)
chr2 (86-215)||(35488023-35488152)
chr2 (64-219)||(10597880-10598035)
chr2 (95-215)||(8066051-8066171)
chr2 (75-208)||(9668838-9668971)
chr2 (87-184)||(36804099-36804196)
chr2 (101-208)||(28400382-28400489)
chr2 (100-206)||(16213385-16213491)
chr2 (87-173)||(22052814-22052900)
chr2 (45-154)||(11234350-11234459)
chr2 (87-184)||(36804314-36804411)
chr2 (101-181)||(15017877-15017957)
chr2 (87-152)||(31774871-31774936)
chr2 (87-208)||(43627686-43627807)
chr2 (87-156)||(13550311-13550380)
chr2 (87-208)||(33548059-33548180)
chr2 (87-151)||(31085526-31085590)
chr2 (102-157)||(11028072-11028127)
chr2 (95-157)||(45421714-45421776)
chr2 (101-157)||(5325960-5326016)
[»] scaffold0112 (2 HSPs)
scaffold0112 (95-209)||(15481-15595)
scaffold0112 (256-364)||(15330-15438)
[»] scaffold0006 (1 HSPs)
scaffold0006 (101-208)||(42339-42446)
[»] scaffold0418 (1 HSPs)
scaffold0418 (95-187)||(7870-7962)
[»] scaffold0029 (1 HSPs)
scaffold0029 (125-187)||(134707-134769)
[»] scaffold0002 (2 HSPs)
scaffold0002 (125-187)||(312534-312596)
scaffold0002 (125-187)||(327988-328050)


Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 380
Target Start/End: Original strand, 7555561 - 7555941
Alignment:
Q  14 cataggtgaagtgtcacaatctgataataaatcataagtatctcgaactaaataaccccccatagggttaggtagccacatccatttatctgaaacatta 113  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7555561 cataggtgaagtgtcacaatctgataataaatcataagcatctcgaactaaataaccccccatagggttaggtggccacatccatttatctgaaacatta 7555660  T
Q  114 ggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactccaccc-------ctc- 205  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||       |||     
T  7555661 ggaaacaaagaaacatcaaccaataaagccctacactcctctaataaattctcctcccacacccacaacctatggcgccaactccacccgcgccaactcc 7555760  T
Q  206 ------ccctccctgcaacagatcgaccacgaaagaacatggaagcaatcgtaacagttttgttctcagctaagtcgaacaacctacgaaaccgctaact 299  Q
          |||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7555761 acccctccctccctacaacagatcaaccacgaaagaacatagaagcaatcgtaacagttttgttctcagctaagtcgaacaacctacgaaaccgctaact 7555860  T
Q  300 aaggggagaaccaccaatccatctatgcaaccaaaataatgtatcaaccccatctcccaccttcctcaacacactgtcacc 380  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  7555861 aaggggagaaccaccaatccatctatgcaaccaaaataatgtattagccccatctcccaccttcctcaacacactgtcacc 7555941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 11394287 - 11394180
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactccac 200  Q
    |||||||| ||||||||||||| |||| |||| |||||| |||||||||||||||||||||  |||||||||| |||||||||| || | | ||||||||    
T  11394287 atctgaaatattaggaaacaaaaaaacttcaagcagtaaggccctacactcctctaataaaacctcctcccacgcccacaacctccgcctccaactccac 11394188  T
Q  201 ccctcccc 208  Q
    ||||||||    
T  11394187 ccctcccc 11394180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 101 - 184
Target Start/End: Original strand, 24793952 - 24794035
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacct 184  Q
    |||||||| ||||||||||||||||||||||| |||||| || ||||||||||||||||||  |||||||||| ||||||||||    
T  24793952 atctgaaatattaggaaacaaagaaacatcaagcagtaatgctctacactcctctaataaaacctcctcccacgcccacaacct 24794035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 208
Target Start/End: Complemental strand, 43253720 - 43253557
Alignment:
Q  45 tcataagtatctcgaactaaataaccccccatagggttaggtagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccc 144  Q
    ||||||| | |||||||| ||||||| |  ||||||| ||| ||||| |||||   |||||||| || || ||||| ||||||||||| |||||||| ||    
T  43253720 tcataagcacctcgaactgaataacctcttatagggtcaggaagccaaatccaagaatctgaaatatcagtaaacagagaaacatcaagcagtaaagtcc 43253621  T
Q  145 tacactcctctaataaattctcctcccacacccacaacctacggcgcaaactccacccctcccc 208  Q
    ||||||||||||| | | ||||||||||| |||||||||| || | |  |||||||||||||||    
T  43253620 tacactcctctaagacaatctcctcccacgcccacaacctccgcctccgactccacccctcccc 43253557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 12134518 - 12134630
Alignment:
Q  90 cacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggc 189  Q
    |||| |||| ||||||||||||||||||| | |||||| ||||  ||||||||||||||||||||||  || | |||||||||| |||||||| |||| |    
T  12134518 cacacccatctatctgaaacattaggaaaaacagaaacgtcaaatagtaaagccctacactcctctaccaagtcctcctcccacgcccacaacgtacgcc 12134617  T
Q  190 gcaaactccaccc 202  Q
    || | ||||||||    
T  12134618 gccacctccaccc 12134630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 4988018 - 4987924
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaa 181  Q
    ||||||| ||||| |||||||||||||  ||| ||||||||||||| ||| ||||||||||||||| |||| |  | |||||||||| |||||||    
T  4988018 agccacaaccattgatctgaaacattaacaaataaagaaacatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaa 4987924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 187
Target Start/End: Original strand, 7452547 - 7452639
Alignment:
Q  95 ccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacg 187  Q
    |||| ||||||||||||| ||||||||   ||||||||  ||||||||||||||||||||||||||   ||||||||||  |||||| |||||    
T  7452547 ccatctatctgaaacattcggaaacaagagaacatcaagaagtaaagccctacactcctctaataacacctcctcccactgccacaatctacg 7452639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 44082951 - 44082844
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactccac 200  Q
    ||||||||||||||||| |||||| | |||||  ||||| |||||||||||||||| ||||  ||| |||||  ||||||| ||||| | | | ||||||    
T  44082951 atctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcatcccaagcccacaatctacgcctccacctccac 44082852  T
Q  201 ccctcccc 208  Q
    ||||||||    
T  44082851 ccctcccc 44082844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 36157359 - 36157414
Alignment:
Q  102 tctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaa 157  Q
    ||||||| ||||| | ||||||||||||||| |||||||| |||||||||||||||    
T  36157359 tctgaaatattagcatacaaagaaacatcaagcagtaaagtcctacactcctctaa 36157414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 2872377 - 2872447
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaa 157  Q
    ||||||| |||  |||||||||||||||||  ||| ||||||||||  ||||||||||||||||| |||||    
T  2872377 agccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctaa 2872447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 16420963 - 16420842
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctac 186  Q
    ||||||| |||  |||||||||||||||||  ||| |||||||| |  ||||||||||||| ||| ||||  || | ||||||||||  ||| |||||||    
T  16420963 agccacacccagctatctgaaacattaggattcaaggaaacatcgagaagtaaagccctacgctcatctagcaactcctcctcccactgccataacctac 16420864  T
Q  187 ggcgcaaactccacccctcccc 208  Q
    | | | | |||||| |||||||    
T  16420863 gtctccacctccacacctcccc 16420842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 23680381 - 23680445
Alignment:
Q  119 caaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacc 183  Q
    |||||||||||||  || |||||||||||||||||||||    | ||||||||| ||||||||||    
T  23680381 caaagaaacatcagtcaataaagccctacactcctctaactcctcctcctcccaaacccacaacc 23680445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 9e-43; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 65 - 386
Target Start/End: Original strand, 17855901 - 17856218
Alignment:
Q  65 ataaccccccatagggttaggtagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattc 164  Q
    ||||||||||| ||| | ||||| ||||| |||| |||||||||||||||| |||||||||| ||||| |||||||||| ||  ||||||||||||||||    
T  17855901 ataaccccccacaggatcaggtaaccacacccatctatctgaaacattaggcaacaaagaaatatcaagcagtaaagccttaagctcctctaataaattc 17856000  T
Q  165 tcctcccacacccacaacctacggcgcaaactccacccctcccctccctgcaacagatcgaccacgaaagaacatggaagcaatcgtaacagttttgttc 264  Q
    ||||||||  ||||||||||||| |   |||||||||| ||||||||||||  ||    | ||| || |||||||    || | || ||  |||||||||    
T  17856001 tcctcccaagcccacaacctacgtcttcaactccacccttcccctccctgctcca----ggccaagagagaacatattcgccaccgaaatggttttgttc 17856096  T
Q  265 tcagctaagtcgaacaacctacgaaaccgctaactaaggggagaaccaccaatccatctatgcaaccaaaataatgtatcaaccccatctcccaccttcc 364  Q
    ||||||||||| ||||||||||||||||||| |||||  |||  | |||||| ||| |||||  ||||||| || |||||| | ||||| |||||||| |    
T  17856097 tcagctaagtcaaacaacctacgaaaccgctcactaaaaggaacatcaccaaaccacctatgagaccaaaacaacgtatcagcaccatcccccacctttc 17856196  T
Q  365 tcaacacactgtcaccgaacca 386  Q
    | | |||||| || ||||||||    
T  17856197 taagcacactatcgccgaacca 17856218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 100 - 215
Target Start/End: Original strand, 18671370 - 18671485
Alignment:
Q  100 tatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactcca 199  Q
    |||||||||||||||||| |||||| | |||||  ||||| ||||||||||||||||| |||  |||||||||  ||||||||||||| ||| |||||||    
T  18671370 tatctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctaacaaagcctcctcccatgcccacaacctacgccgccaactcca 18671469  T
Q  200 cccctcccctccctgc 215  Q
    ||||||||| ||||||    
T  18671470 cccctccccaccctgc 18671485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 19728688 - 19728795
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactccac 200  Q
    |||||||| |||||||||||||||||||||||  |||||  ||||||||||||||||||||  |||||||||| |||||||||| || | | ||||||||    
T  19728688 atctgaaatattaggaaacaaagaaacatcaagtagtaagaccctacactcctctaataaaacctcctcccacgcccacaacctccgtctccaactccac 19728787  T
Q  201 ccctcccc 208  Q
    ||||||||    
T  19728788 ccctcccc 19728795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 41339714 - 41339833
Alignment:
Q  89 ccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacgg 188  Q
    ||||| ||||||||||||||||| |||||| | ||| |||||||  ||||||| |||||||||||||||||| | |||||||||| |||||||||| |      
T  41339714 ccacacccatttatctgaaacatgaggaaaaacagagacatcaaatagtaaagtcctacactcctctaataattcctcctcccacgcccacaacctgcat 41339813  T
Q  189 cgcaaactccacccctcccc 208  Q
    ||| | ||||||||||||||    
T  41339814 cgccacctccacccctcccc 41339833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 205
Target Start/End: Complemental strand, 47105586 - 47105445
Alignment:
Q  64 aataaccccccatagggttaggtagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaatt 163  Q
    ||||||| || |||||||| || ||||| |||||   |||||||| || || ||||| ||||||||||| |||||||| ||||||||||||||| | | |    
T  47105586 aataacctcctatagggttcggaagccaaatccaagaatctgaaatatcagtaaacagagaaacatcaagcagtaaagtcctacactcctctaagacaat 47105487  T
Q  164 ctcctcccacacccacaacctacggcgcaaactccacccctc 205  Q
    |||||||||| |||||||||  || | | |||||||||||||    
T  47105486 ctcctcccacgcccacaaccaccgcctccaactccacccctc 47105445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 5326959 - 5327078
Alignment:
Q  89 ccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacgg 188  Q
    ||||| ||||||||||||||||| |||||| | ||| |||||||  ||||||| ||||||||||| |||||| | |||||||||| |||||||| |  |     
T  5326959 ccacacccatttatctgaaacatgaggaaaaacagagacatcaaatagtaaagtcctacactcctttaataattcctcctcccacgcccacaacatgtgt 5327058  T
Q  189 cgcaaactccacccctcccc 208  Q
    ||| | ||||||||||||||    
T  5327059 cgccacctccacccctcccc 5327078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 31025442 - 31025328
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactccac 200  Q
    |||||||| || || ||||| |||||||||||  ||||||| | ||||||||||||| | | ||||||||||| |||||||||| || | | ||||||||    
T  31025442 atctgaaatatcagtaaacagagaaacatcaagtagtaaagtcatacactcctctaagacaatctcctcccacgcccacaacctccgcctccaactccac 31025343  T
Q  201 ccctcccctccctgc 215  Q
    |||||||| ||||||    
T  31025342 ccctccccaccctgc 31025328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 8771635 - 8771742
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactccac 200  Q
    ||||||||||||||||| |||||| | |||||  ||||| |||||||||||||||| ||||  |||||||||  ||||||  ||||| | | ||||||||    
T  8771635 atctgaaacattaggaatcaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacagtctacgcctccaactccac 8771734  T
Q  201 ccctcccc 208  Q
    ||||||||    
T  8771735 ccctcccc 8771742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 18767609 - 18767716
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactccac 200  Q
    ||||||||||||||||| |||||| | |||||  ||||| |||||||||||||||| ||||  |||||||||  ||||||| ||||| | | | ||||||    
T  18767609 atctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaatctacgcctccacctccac 18767708  T
Q  201 ccctcccc 208  Q
    ||||||||    
T  18767709 ccctcccc 18767716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 173
Target Start/End: Original strand, 45943038 - 45943124
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccac 173  Q
    ||||||| |||  |||||||||||||||||  ||||||||||||||  ||||||||||||||||||||||  || | ||||||||||    
T  45943038 agccacacccagctatctgaaacattaggattcaaagaaacatcaagaagtaaagccctacactcctctagcaactcctcctcccac 45943124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 13554117 - 13554034
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacct 184  Q
    |||||||| || || ||||| ||||||||||| |||||||| ||||||||||||||||| |  ||||||||||  |||||||||    
T  13554117 atctgaaatatcagtaaacagagaaacatcaagcagtaaagtcctacactcctctaatacaacctcctcccacgtccacaacct 13554034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 181
Target Start/End: Original strand, 25924258 - 25924351
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaa 181  Q
    ||||||| ||||| |||||||||||||  || |||||||||||||| ||| ||  ||||||||||| |||| || | |||||||||| |||||||    
T  25924258 agccacaaccattgatctgaaacattaacaagcaaagaaacatcaagcag-aagaccctacactccactaacaactcctcctcccacgcccacaa 25924351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 27941415 - 27941353
Alignment:
Q  119 caaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaa 181  Q
    |||||||||||||| |||||||| | ||||||||||||| || | |||||||||| |||||||    
T  27941415 caaagaaacatcaaacagtaaagtcttacactcctctaacaactcctcctcccacgcccacaa 27941353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 33796320 - 33796250
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaa 157  Q
    ||||||| ||| | |||||||||||||  |  |||||||||||||| |||||||| |||||||||||||||    
T  33796320 agccacaaccaatgatctgaaacattaacattcaaagaaacatcaaacagtaaagtcctacactcctctaa 33796250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 178
Target Start/End: Complemental strand, 34458098 - 34458020
Alignment:
Q  100 tatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacaccca 178  Q
    |||||||||||||||||| |||||| | |||||  ||||| |||||||||||||||| ||||  |||||| ||| ||||    
T  34458098 tatctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctctcacgccca 34458020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 187
Target Start/End: Complemental strand, 15653650 - 15653558
Alignment:
Q  95 ccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacg 187  Q
    |||| ||||||||||||| ||||||||   ||||||||  |||||||||||||||||| |||| |  | ||||||||||  |||||| |||||    
T  15653650 ccatctatctgaaacattcggaaacaagagaacatcaagaagtaaagccctacactccgctaacatctcctcctcccactgccacaatctacg 15653558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 36228094 - 36227982
Alignment:
Q  96 catttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaac 195  Q
    |||||||||||||||||  |||| | |  ||||||||  ||||| ||||||||||||| ||| | ||  ||||||||| ||||||  ||||| ||| |||    
T  36228094 catttatctgaaacattttgaaaaagaacaacatcaaatagtaacgccctacactcctttaacacatcttcctcccacgcccacagtctacgacgccaac 36227995  T
Q  196 tccacccctcccc 208  Q
    |||||||| ||||    
T  36227994 tccaccccacccc 36227982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 360
Target Start/End: Complemental strand, 36227885 - 36227834
Alignment:
Q  309 accaccaatccatctatgcaaccaaaataatgtatcaaccccatctcccacc 360  Q
    |||||||||||| |||||||||||||| || |||||| ||||||| ||||||    
T  36227885 accaccaatccacctatgcaaccaaaaaaaagtatcagccccatcgcccacc 36227834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 386
Target Start/End: Original strand, 41339928 - 41340007
Alignment:
Q  307 gaaccaccaatccatctatgcaaccaaaataatgtatcaaccccatctcccaccttcctcaacacactgtcaccgaacca 386  Q
    ||||| |||||||| |||||   |||||| || || ||| |||||||||||||| ||||||||||||| | |||||||||    
T  41339928 gaacccccaatccacctatgagtccaaaacaacgtttcatccccatctcccaccctcctcaacacactattaccgaacca 41340007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 45992780 - 45992857
Alignment:
Q  104 tgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaa 181  Q
    ||||||||||  || |||| ||||||||| ||| ||||||||||||||| |||| |  | |||||||||| |||||||    
T  45992780 tgaaacattaacaagcaaaaaaacatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaa 45992857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 43105506 - 43105562
Alignment:
Q  95 ccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactc 151  Q
    |||| ||||||||||||| |||||||| ||||||| ||  ||||| |||||||||||    
T  43105506 ccatctatctgaaacattcggaaacaaggaaacattaaagagtaacgccctacactc 43105562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 65 - 215
Target Start/End: Original strand, 33804946 - 33805095
Alignment:
Q  65 ataaccccccatagggttaggtagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattc 164  Q
    ||||||||||  ||||| ||||| ||||| |||| |||||||||||||||| |||||||||||||||| |||||||||||||  ||||||||||||||||    
T  33804946 ataaccccccgaagggtcaggtaaccacaaccatctatctgaaacattaggcaacaaagaaacatcaagcagtaaagccctaagctcctctaataaattc 33805045  T
Q  165 tcctcccacacccacaacctacggcgcaaactccacccctcccctccctgc 215  Q
    ||||||||  ||||||||||||| | | |||||||||| ||||||||||||    
T  33805046 tcctcccaagcccacaacctacgtctc-aactccacccttcccctccctgc 33805095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 65 - 210
Target Start/End: Original strand, 4474863 - 4475008
Alignment:
Q  65 ataaccccccatagggttaggtagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattc 164  Q
    ||||||||||| ||||| || || ||||| |||| | |||||||||||||| | ||||||||||| || || ||||| |||| |||||||||||||||||    
T  4474863 ataaccccccacagggtcagataaccacacccatctgtctgaaacattaggcagcaaagaaacattaagcaataaagtcctaaactcctctaataaattc 4474962  T
Q  165 tcctcccacacccacaacctacggcgcaaactccacccctcccctc 210  Q
    ||||||||| ||||||||||||| | | | |||||||| |||||||    
T  4474963 tcctcccacgcccacaacctacgtctccacctccacccttcccctc 4475008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 45 - 206
Target Start/End: Original strand, 13085684 - 13085845
Alignment:
Q  45 tcataagtatctcgaactaaataaccccccatagggttaggtagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccc 144  Q
    ||||||| | |||||||| || |||| || ||||||| ||| ||||| |||||   |||||||| ||  | ||||||||||||||||| |||||||| ||    
T  13085684 tcataagcacctcgaactgaaaaacctcctatagggtcaggaagccaaatccaagaatctgaaatatcggtaaacaaagaaacatcaagcagtaaagtcc 13085783  T
Q  145 tacactcctctaataaattctcctcccacacccacaacctacggcgcaaactccacccctcc 206  Q
    ||||||||||||  | | ||||||||||| |||||||||| || | | ||||||||||||||    
T  13085784 tacactcctctaggacaatctcctcccacgcccacaacctccgcctccaactccacccctcc 13085845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 100 - 215
Target Start/End: Original strand, 9565567 - 9565682
Alignment:
Q  100 tatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactcca 199  Q
    ||||| |||||||||||| |||||| | |||||  ||||| | | ||||||||||||  |||  |||||||||| ||||||||||||| | | |||||||    
T  9565567 tatctaaaacattaggaaccaaagagatatcaaaaagtaacgtcttacactcctctagcaaagcctcctcccacgcccacaacctacgcctccaactcca 9565666  T
Q  200 cccctcccctccctgc 215  Q
    ||||||||| ||||||    
T  9565667 cccctccccaccctgc 9565682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 106 - 181
Target Start/End: Original strand, 11468787 - 11468862
Alignment:
Q  106 aaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaa 181  Q
    |||||||||||| || ||||||||||| ||| |||||||||||||| |||| ||||||||||||||| ||| ||||    
T  11468787 aaacattaggaaccagagaaacatcaaacagaaaagccctacactcgtctagtaaattctcctcccaaacctacaa 11468862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 25318054 - 25318141
Alignment:
Q  100 tatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacg 187  Q
    |||||||||||||||||  ||||||||||||||  ||||||||||||||||||||||  || | ||||||||||  ||| ||||||||    
T  25318054 tatctgaaacattaggattcaaagaaacatcaagaagtaaagccctacactcctctagcaactcctcctcccactgccataacctacg 25318141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 26205548 - 26205635
Alignment:
Q  100 tatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacg 187  Q
    |||||||||||||||||  ||||||||||||||  ||||||||||||||||||||||  || | ||||||||||  ||| ||||||||    
T  26205548 tatctgaaacattaggattcaaagaaacatcaagaagtaaagccctacactcctctagcaactcctcctcccactgccataacctacg 26205635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 362
Target Start/End: Original strand, 4478340 - 4478446
Alignment:
Q  256 gttttgttctcagctaagtcgaacaacctacgaaaccgctaactaaggggagaaccaccaatccatctatgcaaccaaaataatgtatcaaccccatctc 355  Q
    |||||||||||||||||| | |||||||||| ||||| || |||||  |||| | |||||| ||| |||| ||||||||| ||||||||| | ||||| |    
T  4478340 gttttgttctcagctaaggcaaacaacctactaaaccactcactaaaaggagcatcaccaagccacctattcaaccaaaacaatgtatcagcaccatccc 4478439  T
Q  356 ccacctt 362  Q
    |||||||    
T  4478440 ccacctt 4478446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 215
Target Start/End: Complemental strand, 23066007 - 23065871
Alignment:
Q  83 aggtagccacatccatttatctgaaaca---ttaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccac 179  Q
    ||||||||||  |||| |||||||||||   ||||||| |||||| | |||||  |||| |||| ||||||||||||  |||| |||||||||| |||||    
T  23066007 aggtagccactcccatatatctgaaacaatattaggaaccaaagagatatcaaatagtagagccttacactcctctagcaaatcctcctcccacgcccac 23065908  T
Q  180 aacctacggcgcaaactcca-cccctcccctccctgc 215  Q
    |||| ||| ||| ||||||| ||||||||| ||||||    
T  23065907 aaccgacgccgccaactccaccccctccccaccctgc 23065871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 503495 - 503415
Alignment:
Q  77 agggttaggtagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaa 157  Q
    |||||| || ||||||| ||||| |||||||||||||  || |||||||||||||| ||| ||||||||||||||| ||||    
T  503495 agggttcgggagccacaaccattgatctgaaacattaacaagcaaagaaacatcaagcagaaaagccctacactccactaa 503415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 87 - 181
Target Start/End: Original strand, 19255827 - 19255921
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaa 181  Q
    ||||||| ||||| |||||||||||||  || |||| ||||||||| ||| ||||||||||||||| |||| |  | |||||||||| |||||||    
T  19255827 agccacaaccattgatctgaaacattaacaagcaaaaaaacatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaa 19255921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 87 - 181
Target Start/End: Original strand, 33640105 - 33640199
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaa 181  Q
    ||||||| ||||| |||||||||||||  || |||| ||||||||| ||| ||||||||||||||| |||| |  | |||||||||| |||||||    
T  33640105 agccacaaccattgatctgaaacattaacaagcaaaaaaacatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaa 33640199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 15674012 - 15674133
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctac 186  Q
    ||||||| |||  |||||||||||||||||  ||| ||||||||||  ||||||||||| ||||| ||||  || | ||||||||||  |||||||||||    
T  15674012 agccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctgcactcatctagcaactcctcctcccactgccacaacctac 15674111  T
Q  187 ggcgcaaactccacccctcccc 208  Q
    | | | | |||||| |||||||    
T  15674112 gtctccacctccacacctcccc 15674133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 23347420 - 23347299
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctac 186  Q
    ||||||| |||  |||||||||||||||||  ||| ||||||||||  ||||||||||||||||| ||||  || | ||||||||||  ||| |||||||    
T  23347420 agccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctac 23347321  T
Q  187 ggcgcaaactccacccctcccc 208  Q
    | | | | |||||| |||||||    
T  23347320 gtctccacctccacacctcccc 23347299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 208
Target Start/End: Original strand, 24378977 - 24379085
Alignment:
Q  100 tatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactcca 199  Q
    ||||||||| |||||||| || ||| | |||||  ||||| |||||||||||||||||||||  |||||||||| |||| |  ||||| | | | |||||    
T  24378977 tatctgaaatattaggaaccagagagatatcaaatagtaacgccctacactcctctaataaaagctcctcccacgcccatagtctacgcctccatctcca 24379076  T
Q  200 cccctcccc 208  Q
    |||||||||    
T  24379077 cccctcccc 24379085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 8264432 - 8264502
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaa 157  Q
    ||||||| ||||| |||||||||||||  || |||||||||||||| ||| | ||||||||||||| ||||    
T  8264432 agccacaaccattgatctgaaacattaacaagcaaagaaacatcaagcagaagagccctacactccactaa 8264502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 208
Target Start/End: Original strand, 21549048 - 21549156
Alignment:
Q  100 tatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactcca 199  Q
    ||||||||||||||| || || ||| | |||||  ||||| || ||||||||||||| ||||  |||||||||| |||| |  ||||| | | |||||||    
T  21549048 tatctgaaacattagtaaccagagagatatcaaatagtaacgctctacactcctctagtaaaagctcctcccacgcccaaagtctacgcctccaactcca 21549147  T
Q  200 cccctcccc 208  Q
    |||||||||    
T  21549148 cccctcccc 21549156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 389
Target Start/End: Original strand, 11468972 - 11469054
Alignment:
Q  307 gaaccaccaatccatctatgcaaccaaaataatgtatcaaccccatctcccaccttcctcaacacactgtcaccgaaccacct 389  Q
    |||||||| | |||||||||  ||||||| ||  |||||  |||||| ||||||||||||| |||| ||||||| ||||||||    
T  11468972 gaaccacccaaccatctatgagaccaaaacaacatatcattcccatcacccaccttcctcaccacattgtcaccaaaccacct 11469054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 18588571 - 18588636
Alignment:
Q  119 caaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacct 184  Q
    ||||||||||| ||  |||||   ||||||||||||||| | || |||||||||||||||||||||    
T  18588571 caaagaaacattaagaagtaacaacctacactcctctaaaagatcctcctcccacacccacaacct 18588636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 5085965 - 5085885
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaa 181  Q
    |||||||||||||  |  ||||||||||| || ||| | |||||||||||||||||| |  | |||||||||| |||||||    
T  5085965 atctgaaacattaacatgcaaagaaacattaagcagaagagccctacactcctctaacatctcctcctcccacgcccacaa 5085885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 65 - 215
Target Start/End: Complemental strand, 16873467 - 16873317
Alignment:
Q  65 ataaccccccatagggttaggtagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattc 164  Q
    |||||| |||| ||||| ||||| ||||| |||| | |||||||||||||| |||||||||||||||| |||||||||||||  ||||||||||||| ||    
T  16873467 ataacctcccaaagggtcaggtaaccacaaccatctgtctgaaacattaggcaacaaagaaacatcaagcagtaaagccctaagctcctctaataaaatc 16873368  T
Q  165 tcctcccacacccacaacctacggcgcaaactccacccctcccctccctgc 215  Q
    ||||||||  ||||||||||||| | | | |||||||| ||||||||||||    
T  16873367 tcctcccaagcccacaacctacgtctccacctccacccatcccctccctgc 16873317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 64 - 212
Target Start/End: Original strand, 20795832 - 20795980
Alignment:
Q  64 aataaccccccatagggttaggtagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaatt 163  Q
    ||||||| || ||||||| ||| ||||| |||||   |||||||| || || ||||| ||||||||||| |||||||| ||||||||||||||| | | |    
T  20795832 aataacctcctatagggtcaggaagccaaatccaagaatctgaaatatcagtaaacagagaaacatcaagcagtaaagtcctacactcctctaagacaat 20795931  T
Q  164 ctcctcccacacccacaacctacggcgcaaactccacccctcccctccc 212  Q
    |||||||||| |||||||||| || | | ||||||||||||||||||||    
T  20795932 ctcctcccacgcccacaacctccgcctccaactccacccctcccctccc 20795980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 64 - 208
Target Start/End: Complemental strand, 49264940 - 49264796
Alignment:
Q  64 aataaccccccatagggttaggtagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaatt 163  Q
    ||||||| || || |||| ||| ||||| |||||   |||||||| || || ||||| ||||||||||| |||||| | ||||||||||||||| | | |    
T  49264940 aataacctcctatggggtcaggaagccaaatccaagaatctgaaatatcagtaaacagagaaacatcaagcagtaatgtcctacactcctctaagacaat 49264841  T
Q  164 ctcctcccacacccacaacctacggcgcaaactccacccctcccc 208  Q
    |||||||||| |||||||||| || | | ||||||||||||||||    
T  49264840 ctcctcccacgcccacaaccttcgcctccaactccacccctcccc 49264796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 95 - 335
Target Start/End: Complemental strand, 34853586 - 34853350
Alignment:
Q  95 ccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaa 194  Q
    ||||||||||||||||||| ||| |||||| |||||||  ||||| ||||||||||||||||  ||| || | |||||| |||||| |||| | | | |     
T  34853586 ccatttatctgaaacattatgaaccaaagagacatcaaatagtaacgccctacactcctctagcaaagtcccatcccacgcccacagcctatgacaccat 34853487  T
Q  195 ctccacccctcccctccctgcaacagatcgaccacgaaagaacatggaagcaatcgtaacagttttgttctcagctaagtcgaacaacctacgaaaccgc 294  Q
    ||||||||| |||| ||||||  ||||    ||| |  ||||||  | ||| |  ||||  ||||||||||||| |||||| ||||| | | |||| |||    
T  34853486 ctccaccccgccccaccctgctccaga---cccatg-gagaacaaagtagccactgtaatggttttgttctcagataagtcaaacaagcgaggaaatcgc 34853391  T
Q  295 taactaaggggagaaccaccaatccatctatgcaaccaaaa 335  Q
      |||||| || |||||||||||||||||||||||||||||    
T  34853390 acactaagcggggaaccaccaatccatctatgcaaccaaaa 34853350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 30970561 - 30970496
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcc 152  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||  ||||| ||||||||||||    
T  30970561 agccacacccatttatctgaaacattaggagacaaagaaacatcaagaagtaaggccctacactcc 30970496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 205
Target Start/End: Original strand, 39430442 - 39430583
Alignment:
Q  64 aataaccccccatagggttaggtagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaatt 163  Q
    ||||||| || |||||||  || ||||| |||||   |||||||| || || ||||| ||||| |||||  ||||||| ||||||||||||||| | | |    
T  39430442 aataacctcctatagggtccggaagccaaatccaagaatctgaaatatcagtaaacagagaaatatcaagtagtaaagtcctacactcctctaagacaat 39430541  T
Q  164 ctcctcccacacccacaacctacggcgcaaactccacccctc 205  Q
    ||||||||||||||||||||| || | | |||||||||||||    
T  39430542 ctcctcccacacccacaacctccgcctccaactccacccctc 39430583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 48265658 - 48265571
Alignment:
Q  100 tatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacg 187  Q
    ||||||||||||| ||||||||   ||||||||  |||||||||||||||||| |||| || | ||||||||||  ||||||||||||    
T  48265658 tatctgaaacattcggaaacaagagaacatcaagaagtaaagccctacactccgctaacaactcctcctcccactgccacaacctacg 48265571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 25504946 - 25504852
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaa 181  Q
    ||||||| ||||| |||||||||||||  || ||| |||||||||| ||| ||||||||||||||| |||| |  | |||||||||| |||||||    
T  25504946 agccacaaccattgatctgaaacattaacaagcaacgaaacatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaa 25504852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 17827512 - 17827584
Alignment:
Q  110 attaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaac 182  Q
    ||||| ||||| | ||||||||| |||||||| ||||||||||||||| | | ||||||||||| ||||||||    
T  17827512 attagtaaacagataaacatcaagcagtaaagtcctacactcctctaagacaatctcctcccacgcccacaac 17827584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 32353250 - 32353181
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctcta 156  Q
    ||||||| |||  |||||||||||||||||  ||| ||||||||||  ||||||||||||||||| ||||    
T  32353250 agccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatcta 32353181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 48073384 - 48073263
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctac 186  Q
    ||||||| |||  ||||||||||| |||||  ||| ||||||||||  |||||||||| |||||| ||||  || | |||||||||| |||| |||||||    
T  48073384 agccacacccagctatctgaaacaataggattcaaggaaacatcaagaagtaaagccccacactcatctagcaactcctcctcccactcccataacctac 48073285  T
Q  187 ggcgcaaactccacccctcccc 208  Q
    | | | | |||||| |||||||    
T  48073284 gtctccacctccacacctcccc 48073263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 36929362 - 36929421
Alignment:
Q  95 ccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctc 154  Q
    |||| ||||||||||||| ||||||||   ||||||||  ||||||||||||||||||||    
T  36929362 ccatatatctgaaacatttggaaacaagagaacatcaagaagtaaagccctacactcctc 36929421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 36305979 - 36306041
Alignment:
Q  95 ccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaa 157  Q
    |||| ||||||||||||| ||||||||   || |||||  |||||||||||||||||||||||    
T  36305979 ccatatatctgaaacattcggaaacaatagaatatcaagaagtaaagccctacactcctctaa 36306041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 7396647 - 7396594
Alignment:
Q  104 tgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaa 157  Q
    ||||||||||| |  |||||||||||||| |||||||  |||||||||||||||    
T  7396647 tgaaacattagcatgcaaagaaacatcaagcagtaaaatcctacactcctctaa 7396594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 37530773 - 37530822
Alignment:
Q  107 aacattaggaaacaaagaaacatcaaccagtaaagccctacactcctcta 156  Q
    ||||||||||  ||| ||||||||||  ||||||||||||||||||||||    
T  37530773 aacattaggattcaaggaaacatcaagaagtaaagccctacactcctcta 37530822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 65 - 374
Target Start/End: Original strand, 17311 - 17615
Alignment:
Q  65 ataaccccccatagggttaggtagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattc 164  Q
    ||||||||||  ||||| ||||| ||||| |||| | |||||||||||||| |||||||||||||| | |||||||||||||  ||||||||||||||||    
T  17311 ataaccccccgaagggtcaggtaaccacaaccatctgtctgaaacattaggcaacaaagaaacatccagcagtaaagccctaagctcctctaataaattc 17410  T
Q  165 tcctcccacacccacaacctacggcgcaaactccacccctcccctccctgcaacagatcgaccacgaaagaacatggaagcaatcgtaacagttttgttc 264  Q
    |||||||   ||||||||||||| | | | |||||||| |||||||| |||  ||    | ||| || |||||||    |  | || ||  |||||||||    
T  17411 tcctccccagcccacaacctacgtctccatctccacccttcccctccttgctcca----ggccaagagagaacatattcggcaccgaaatggttttgttc 17506  T
Q  265 tcagctaagtcgaacaacctacgaaaccgctaactaaggggagaaccaccaatccatctatgcaaccaaaataatgtatcaaccccatctcccaccttcc 364  Q
    | ||| ||||| ||||||||||||||||||| |||||  |||  | |||||| ||| |||||  ||||||| || |||||||| ||||| ||||||||||    
T  17507 ttagcaaagtcaaacaacctacgaaaccgctcactaaaaggaacatcaccaaaccacctatgagaccaaaacaacgtatcaacaccatc-cccaccttcc 17605  T
Q  365 tcaacacact 374  Q
    | ||||||||    
T  17606 ttaacacact 17615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 65 - 374
Target Start/End: Complemental strand, 35122681 - 35122376
Alignment:
Q  65 ataaccccccatagggttaggtagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattc 164  Q
    |||||| |||| ||||| ||||| ||||| |||| | |||||||||||||  |||||||||||||||| |||||||||||||  ||||||||||||| ||    
T  35122681 ataacctcccaaagggtcaggtaaccacaaccatctgtctgaaacattagacaacaaagaaacatcaagcagtaaagccctaagctcctctaataaagtc 35122582  T
Q  165 tcctcccacacccacaacctacggcgcaaactccacccctcccctccctgcaacagatcgaccacgaaagaacatggaagcaatcgtaacagttttgttc 264  Q
    ||||||||  ||||||||||||| | | | ||||||||  |||||||||||  ||| |    || || |||||||    || |  | ||  |||||||||    
T  35122581 tcctcccaagcccacaacctacgtctccacctccacccaacccctccctgctccaggt----caagagagaacatattcgccacagaaatggttttgttc 35122486  T
Q  265 tcagctaagtcgaacaacctacgaaaccgctaactaaggggagaaccaccaatccatctatgcaaccaaaataatgtatcaaccccatctcccaccttcc 364  Q
    ||||||||||| ||||||||||||||||||| |||||  |||  | || ||| ||| |||||  ||||||| || |||||| | ||||| ||||||||||    
T  35122485 tcagctaagtcaaacaacctacgaaaccgctcactaaaaggaacatcatcaaaccacctatgagaccaaaacaacgtatcagcaccatcccccaccttcc 35122386  T
Q  365 tcaacacact 374  Q
    | | ||||||    
T  35122385 taagcacact 35122376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 65 - 374
Target Start/End: Complemental strand, 30510020 - 30509717
Alignment:
Q  65 ataaccccccatagggttaggtagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattc 164  Q
    ||||||||||| ||||| ||||||||||| |||| |||||||||||||||| |||||||||||||||| |||||||||||||  |||||||||||||       
T  30510020 ataaccccccacagggtcaggtagccacaaccatctatctgaaacattaggcaacaaagaaacatcaagcagtaaagccctaagctcctctaataaaaat 30509921  T
Q  165 tcctcccacacccacaacctacggcgcaaactccacccctcccctccctgcaacagatcgaccacgaaagaacatggaagcaatcgtaacagttttgttc 264  Q
    ||||||||  ||||||| || || | | ||||||| |||||||| ||||||| ||   || ||| || ||||||| ||||| |  | ||  | |||||||    
T  30509920 tcctcccaagcccacaatcttcgcctccaactcca-ccctcccc-ccctgcacca---cg-ccaagagagaacatagaagccactgaaatggctttgttc 30509827  T
Q  265 tcagctaagtcgaacaacctacgaaaccgctaactaaggggagaaccaccaatccatctatgcaaccaaaataatgtatcaaccccatctcccaccttcc 364  Q
    ||||||||||| |||||||| | |||||||| |||||  |||  | |||||  ||| |||||  |||| || || |||||| | ||||| ||||||||||    
T  30509826 tcagctaagtcaaacaacctgccaaaccgctcactaaaaggacgatcaccacaccacctatgagaccagaacaacgtatcagcaccatcccccaccttcc 30509727  T
Q  365 tcaacacact 374  Q
    | | ||||||    
T  30509726 taatcacact 30509717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 65 - 374
Target Start/End: Complemental strand, 30550360 - 30550057
Alignment:
Q  65 ataaccccccatagggttaggtagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattc 164  Q
    ||||||||||| ||||| ||||||||||| |||| |||||||||||||||| |||||||||||||||| |||||||||||||  |||||||||||||       
T  30550360 ataaccccccacagggtcaggtagccacaaccatctatctgaaacattaggcaacaaagaaacatcaagcagtaaagccctaagctcctctaataaaaat 30550261  T
Q  165 tcctcccacacccacaacctacggcgcaaactccacccctcccctccctgcaacagatcgaccacgaaagaacatggaagcaatcgtaacagttttgttc 264  Q
    ||||||||  ||||||| || || | | ||||||| |||||||| ||||||| ||   || ||| || ||||||| ||||| |  | ||  | |||||||    
T  30550260 tcctcccaagcccacaatcttcgcctccaactcca-ccctcccc-ccctgcacca---cg-ccaagagagaacatagaagccactgaaatggctttgttc 30550167  T
Q  265 tcagctaagtcgaacaacctacgaaaccgctaactaaggggagaaccaccaatccatctatgcaaccaaaataatgtatcaaccccatctcccaccttcc 364  Q
    ||||||||||| |||||||| | |||||||| |||||  |||  | |||||  ||| |||||  |||| || || |||||| | ||||| ||||||||||    
T  30550166 tcagctaagtcaaacaacctgccaaaccgctcactaaaaggacgatcaccacaccacctatgagaccagaacaacgtatcagcaccatcccccaccttcc 30550067  T
Q  365 tcaacacact 374  Q
    | | ||||||    
T  30550066 taatcacact 30550057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 19513404 - 19513297
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactccac 200  Q
    |||||||| ||||||||||||||||| ||||| |||||| |||||||||||||||| ||||  |||||||||| |||||||||| || | | ||||||||    
T  19513404 atctgaaatattaggaaacaaagaaatatcaagcagtaatgccctacactcctctagtaaaacctcctcccacgcccacaacctccgcctccaactccac 19513305  T
Q  201 ccctcccc 208  Q
    ||||||||    
T  19513304 ccctcccc 19513297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 4400078 - 4400185
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactccac 200  Q
    |||||||| ||||||||||||||||||||||| ||||||  ||||||||||||||||||||  ||||||||||   |||||||| || | | ||||||||    
T  4400078 atctgaaatattaggaaacaaagaaacatcaagcagtaagaccctacactcctctaataaaccctcctcccacgttcacaacctccgcctccaactccac 4400177  T
Q  201 ccctcccc 208  Q
    ||||||||    
T  4400178 ccctcccc 4400185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 587703 - 587803
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctac 186  Q
    |||||||  ||| ||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||| | || ||||||||||| ||| | |||||    
T  587703 agccacactcatctatctgaaacattaggatacaaagaaacatcaagaagtaaagccctacactcctctaacatatcctcctcccacatccatagcctac 587802  T
Q  187 g 187  Q
    |    
T  587803 g 587803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 11817991 - 11818098
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactccac 200  Q
    ||||||||||||||||| |||||| | |||||  ||||| |||||||||||||||| ||||  |||||||||  || |||| ||||| | | | ||||||    
T  11817991 atctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcctacaatctacgcctccacctccac 11818090  T
Q  201 ccctcccc 208  Q
    ||||||||    
T  11818091 ccctcccc 11818098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 38357668 - 38357775
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactccac 200  Q
    ||||||||||||||||| |||| | | |||||  ||||| |||||||||||||||| ||||  |||||||||  ||||||| ||||| | | | ||||||    
T  38357668 atctgaaacattaggaaccaaacagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaaactacgcctccacctccac 38357767  T
Q  201 ccctcccc 208  Q
    ||||||||    
T  38357768 ccctcccc 38357775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 95 - 187
Target Start/End: Complemental strand, 10486865 - 10486773
Alignment:
Q  95 ccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacg 187  Q
    |||| ||||||||||||| ||||||||   ||||||||  |||||||||||||||||| |||| |  | ||||||||||  ||||||||||||    
T  10486865 ccatctatctgaaacattcggaaacaagagaacatcaagaagtaaagccctacactccgctaacatgtcctcctcccactgccacaacctacg 10486773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 29094462 - 29094374
Alignment:
Q  85 gtagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccac 173  Q
    ||||||||  |||| |||||||||||||||||| |||||| | |||||  |||| |||||||||||||||||  |||  ||||||||||    
T  29094462 gtagccactcccatatatctgaaacattaggaaccaaagagatatcaaatagtagagccctacactcctctagcaaagcctcctcccac 29094374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 34481134 - 34481203
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctcta 156  Q
    ||||||| |||  |||||| ||||||||||  ||| ||||||||||  ||||||||||||||||||||||    
T  34481134 agccacacccagctatctgcaacattaggattcaaggaaacatcaagaagtaaagccctacactcctcta 34481203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 11574633 - 11574553
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaa 181  Q
    |||| ||||||||  || |||||||||||||| ||| | |||||||||||||||||| |  | |||||||||| |||||||    
T  11574633 atctaaaacattaacaagcaaagaaacatcaaacagaagagccctacactcctctaacatctcctcctcccacgcccacaa 11574553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 22095170 - 22095109
Alignment:
Q  120 aaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaa 181  Q
    ||||||||||||| ||| | ||||||| |||||||||| || | |||||||||| |||||||    
T  22095170 aaagaaacatcaagcagaagagccctaaactcctctaacaactcctcctcccacgcccacaa 22095109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 3727338 - 3727282
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaa 157  Q
    |||||||||||||  |  |||||||||||||| ||| |||| |||||||||||||||    
T  3727338 atctgaaacattaacatgcaaagaaacatcaagcagaaaagtcctacactcctctaa 3727282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 386
Target Start/End: Complemental strand, 54440128 - 54439771
Alignment:
Q  25 tgtcacaatctgataataaatcataagtatctcgaactaaataaccccccatagggttaggtagccacatccatttatctgaaacattaggaaacaaaga 124  Q
    ||||| || ||| |||||| ||||||| | |||||||  | ||||| || || |||| ||| |||||||||||  ||||||||||| || |||||| ||     
T  54440128 tgtcaaaaactgttaataagtcataagcacctcgaacagagtaacctcctatggggtcaggaagccacatccaagtatctgaaacaatatgaaacagagc 54440029  T
Q  125 aacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactccacccctcccctccctgcaacagatcg 224  Q
    |||||||| ||||||||||||||||||||||||||| |  || |||||| ||||||  ||||| | | ||||||| ||||||||  |||||| |  ||      
T  54440028 aacatcaagcagtaaagccctacactcctctaataactcttcttcccacgcccacagtctacgcctccaactccaaccctccccatcctgcatcgaat-- 54439931  T
Q  225 accacgaaagaacatggaagcaatcgtaacagttttgttctcagctaagtcgaacaacctacgaaaccgctaactaaggggagaaccaccaatccatcta 324  Q
      ||    |||||||   ||| |  ||||| ||||||||||| || ||||||||||||||  ||||||||| || |||||| |  ||||||  |||||||    
T  54439930 --caatggagaacatatcagccaatgtaactgttttgttctccgccaagtcgaacaacctcagaaaccgctcacaaaggggcgccccaccacaccatcta 54439833  T
Q  325 tgcaaccaaaataatgtatcaaccccatctcccaccttcctcaacacactgtcaccgaacca 386  Q
    || | |||||| |   |||||| |||||| |||||||||||||||||||  ||| |||||||    
T  54439832 tggagccaaaacagcatatcaatcccatcacccaccttcctcaacacaccatcatcgaacca 54439771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 100 - 215
Target Start/End: Complemental strand, 18368895 - 18368780
Alignment:
Q  100 tatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactcca 199  Q
    ||||||||||||||||| ||||||| | |||||  ||||| ||||||||||||||||  |||  |||||||||||||||||||||||| ||| ||| |||    
T  18368895 tatctgaaacattaggacacaaagagatatcaaatagtaatgccctacactcctctagcaaagcctcctcccacacccacaacctacgccgccaacacca 18368796  T
Q  200 cccctcccctccctgc 215  Q
    ||||||||| ||||||    
T  18368795 cccctccccaccctgc 18368780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 14867724 - 14867617
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactccac 200  Q
    |||||||| |||||||| ||||||||||||||  | ||| |||||||||||||||||||||  |||||||||| |||||||||| || | | ||||||||    
T  14867724 atctgaaatattaggaaccaaagaaacatcaagtattaaggccctacactcctctaataaaacctcctcccacgcccacaacctccgtctccaactccac 14867625  T
Q  201 ccctcccc 208  Q
    ||||||||    
T  14867624 ccctcccc 14867617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 10867944 - 10868030
Alignment:
Q  122 agaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactccacccctcccc 208  Q
    |||||||| || ||||||| |||||||||||||||| | |||||||||||||||||||||||| || | | ||||||||||||||||    
T  10867944 agaaacattaagcagtaaaaccctacactcctctaagacattctcctcccacacccacaacctccgcctccaactccacccctcccc 10868030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 26010213 - 26010303
Alignment:
Q  66 taaccccccatagggttaggtagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctcta 156  Q
    |||||||| |||||||  || ||||||| |||||||||||||||||||||||||| ||||||||||   ||||||| ||||||||||||||    
T  26010213 taacccccgatagggtctgggagccacacccatttatctgaaacattaggaaacacagaaacatcacatagtaaagtcctacactcctcta 26010303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 20198034 - 20197928
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactccac 200  Q
    |||||||| || || ||||| ||||||||||| |||||||| ||| ||||||||||| | | |||||||||||||||||||||| || | | ||||||||    
T  20198034 atctgaaatatcagtaaacagagaaacatcaagcagtaaagtcctgcactcctctaagacaatctcctcccacacccacaacct-cgcctccaactccac 20197936  T
Q  201 ccctcccc 208  Q
    ||||||||    
T  20197935 ccctcccc 20197928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 45684377 - 45684484
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactccac 200  Q
    ||||||||||||||||| |||||| | |||||  ||||| |||||||||||||||| ||||  |||||||||  ||||||  ||||| | | ||||||||    
T  45684377 atctgaaacattaggaatcaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacagtctacgcctccaactccac 45684476  T
Q  201 ccctcccc 208  Q
    ||||||||    
T  45684477 ccctcccc 45684484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 6176431 - 6176345
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccac 173  Q
    ||||||| ||| ||||||||||||||||||  ||||||||||||||  ||||||||||||||||| ||||  || | ||||||||||    
T  6176431 agccacacccagttatctgaaacattaggattcaaagaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccac 6176345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 2813453 - 2813332
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctac 186  Q
    ||||||| |||  |||||||||||||||||  ||| ||||||||||  ||||||||||||||||| ||||  || | ||||||||||  ||| |||||||    
T  2813453 agccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctac 2813354  T
Q  187 ggcgcaaactccacccctcccc 208  Q
    | | | | |||||| |||||||    
T  2813353 gtctccacctccacacctcccc 2813332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 208
Target Start/End: Original strand, 36709105 - 36709218
Alignment:
Q  95 ccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaa 194  Q
    |||| ||||||||||||||| || |||||||| |||||  ||||| |||||||| |||||||  |  |||||||| ||| |||| | |||||| | | ||    
T  36709105 ccatatatctgaaacattagaaaccaaagaaatatcaaatagtaacgccctacagtcctctagcatgttctcctcacacgcccatagcctacgcctccaa 36709204  T
Q  195 ctccacccctcccc 208  Q
    ||||||||||||||    
T  36709205 ctccacccctcccc 36709218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 9379284 - 9379354
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaa 157  Q
    |||||| ||||| ||||||||||||| ||| |||| ||||||||||  ||||| |||||||||||| ||||    
T  9379284 agccacgtccatgtatctgaaacattgggatacaaggaaacatcaagtagtaatgccctacactccgctaa 9379354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 10867845 - 10867943
Alignment:
Q  45 tcataagtatctcgaactaaataaccccccatagggttaggtagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagcc 143  Q
    ||||||| | |||||||| | ||||| || ||||||||||| ||||| |||||   ||||| || ||||||||||| |||||||| || ||||||||||    
T  10867845 tcataagcacctcgaactgagtaacctcctatagggttaggaagccaaatccaagaatctgtaatattaggaaacagagaaacattaagcagtaaagcc 10867943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 173
Target Start/End: Original strand, 23601960 - 23602046
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccac 173  Q
    ||||||| |||  |||||||||||||||||  ||| ||||||||||  ||||||||||||||||| ||||  || | ||||||||||    
T  23601960 agccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccac 23602046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 25873061 - 25872992
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctcta 156  Q
    ||||||| |||  |||||| ||||||||||  ||| ||||||||||  ||||||||||||||||||||||    
T  25873061 agccacacccagctatctgcaacattaggattcaaggaaacatcaaaaagtaaagccctacactcctcta 25872992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 29309595 - 29309716
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctac 186  Q
    ||||||| |||  |||||||||||||||||  ||| ||||||||||  ||||| ||||||||||| ||||  || | ||||||||||  ||| |||||||    
T  29309595 agccacacccaactatctgaaacattaggattcaatgaaacatcaagaagtaacgccctacactcatctagcaactcctcctcccactgccataacctac 29309694  T
Q  187 ggcgcaaactccacccctcccc 208  Q
    | | | | |||||| |||||||    
T  29309695 gtctccacctccacacctcccc 29309716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 208
Target Start/End: Complemental strand, 42675378 - 42675270
Alignment:
Q  100 tatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactcca 199  Q
    |||||||||||||||||| || ||| | |||||  ||||| |||||||| ||||||| ||||  |||||||||| |||| |  ||||| | | | |||||    
T  42675378 tatctgaaacattaggaaccagagagatatcaaatagtaacgccctacattcctctagtaaaagctcctcccacgcccatagtctacgcctccatctcca 42675279  T
Q  200 cccctcccc 208  Q
    |||||||||    
T  42675278 cccctcccc 42675270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 46908620 - 46908552
Alignment:
Q  89 ccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaa 157  Q
    ||||| |||| |||||||||||||||   ||||||| ||||||| |||||||| || ||||||||||||    
T  46908620 ccacacccatctatctgaaacattagagcacaaagacacatcaagcagtaaagtcccacactcctctaa 46908552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 215
Target Start/End: Complemental strand, 15481697 - 15481582
Alignment:
Q  100 tatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactcca 199  Q
    ||||||||||||| | || |||||| | |||||  ||||| ||||||||||||||||  |||  ||||||||||  ||| | |||| | | | |||||||    
T  15481697 tatctgaaacattggaaaccaaagagatatcaaatagtaacgccctacactcctctagcaaagcctcctcccacgtccatagcctaggcctccaactcca 15481598  T
Q  200 cccctcccctccctgc 215  Q
    ||||||||| ||||||    
T  15481597 cccctccccaccctgc 15481582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 187
Target Start/End: Complemental strand, 49731877 - 49731785
Alignment:
Q  95 ccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacg 187  Q
    |||| |||||||||||||  |||||||   ||||||||  |||||||||||||||||| | || || | ||||||||||  |||||| |||||    
T  49731877 ccatctatctgaaacattcagaaacaagagaacatcaagaagtaaagccctacactccgccaacaactcctcctcccactgccacaaactacg 49731785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 42953422 - 42953326
Alignment:
Q  112 taggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactccacccctcccc 208  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||| |||| |||||| |||||||||| || | | ||||||||||||||||    
T  42953422 taggaaacaaagaaacatcaagcagtaaggccctacactcctctaataaactctcttcccacgcccacaacctccgcctccaactccacccctcccc 42953326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 4524620 - 4524478
Alignment:
Q  45 tcataagtatctcgaactaaataaccccccatagggttaggtagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccc 144  Q
    ||||||| | |||||||| | || || || ||||||| ||| ||||||| | |  ||| || || ||||||||||| ||||||||||| ||| |||||||    
T  4524620 tcataagcacctcgaactgagtaccctcctatagggtcaggaagccacacctaagtatttgtaatattaggaaacagagaaacatcaagcagaaaagccc 4524521  T
Q  145 tacactcctctaataaattctcctcccacacccacaacctacg 187  Q
    ||||||||||||| | |||||||||||||||||||||||||||    
T  4524520 tacactcctctaagacattctcctcccacacccacaacctacg 4524478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 87 - 213
Target Start/End: Complemental strand, 4640631 - 4640506
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctac 186  Q
    ||||||| ||| ||||||| || ||||||||||||||| |||||||  |||| || ||||||||||||||| || | |||||||||  |||||||||| |    
T  4640631 agccacacccacttatctgcaa-attaggaaacaaagagacatcaaatagtagagtcctacactcctctaacaagtcctcctcccaagcccacaaccttc 4640533  T
Q  187 ggcgcaaactccacccctcccctccct 213  Q
    | ||| ||||||| |||||||||||||    
T  4640532 gacgccaactccaaccctcccctccct 4640506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 9992777 - 9992706
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctccca 172  Q
    ||||| || ||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  9992777 atctgtaatattaggaaacagagaaacatcaagcagtaaggccctacactcctctaataaattatcctccca 9992706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 19114637 - 19114717
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaa 181  Q
    |||||||||||||  || |||||||||||||| ||| | ||||||||||||||||||||  | ||||||||||||||||||    
T  19114637 atctgaaacattaataagcaaagaaacatcaaacagaagagccctacactcctctaatatctcctcctcccacacccacaa 19114717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 181
Target Start/End: Original strand, 19647896 - 19647990
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaa 181  Q
    ||||||| ||||| |||||||||||||  || |||||||||||||| ||| ||||||||||||||| |||| |  | |||||||||| |||||||    
T  19647896 agccacaaccattgatctgaaacattaacaagcaaagaaacatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaa 19647990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 49926219 - 49926125
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaa 181  Q
    ||||||| ||||| |||||||||||||  || ||| |||||||||| ||| ||||||||||||||| |||| || | |||||||||| |||||||    
T  49926219 agccacaaccattgatctgaaacattaacaagcaacgaaacatcaagcagaaaagccctacactccactaacaactcctcctcccacgcccacaa 49926125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 209
Target Start/End: Original strand, 53810036 - 53810150
Alignment:
Q  95 ccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaa 194  Q
    |||||||||||||||||| |||| |||  |||||||||  ||||| | ||||||||||||||| | ||  ||||||||| ||||||| || || ||| ||    
T  53810036 ccatttatctgaaacatttggaaccaacaaaacatcaaatagtaacgtcctacactcctctaacatatcttcctcccacgcccacaatctgcgccgccaa 53810135  T
Q  195 ctccacccctcccct 209  Q
     ||||||||||||||    
T  53810136 gtccacccctcccct 53810150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 187
Target Start/End: Complemental strand, 8655018 - 8654926
Alignment:
Q  95 ccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacg 187  Q
    |||| ||||||||||||| ||||||||   ||||||||  |||||||||||||||||| |||| || | ||||||||||  ||||||||||||    
T  8655018 ccatctatctgaaacattcggaaacaagagaacatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacg 8654926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 29553679 - 29553599
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaa 181  Q
    |||||||||||||  |  |||||||||||||| |||||||| ||||||||||||||| || | |||||||||| |||||||    
T  29553679 atctgaaacattaacattcaaagaaacatcaaacagtaaagtcctacactcctctaacaactcctcctcccacgcccacaa 29553599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 2631585 - 2631706
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctac 186  Q
    ||||||| |||  |||||||||||||||||  ||| ||||||||||  ||||||||||||||||| ||||  || | ||||||||||  ||| |||||||    
T  2631585 agccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctac 2631684  T
Q  187 ggcgcaaactccacccctcccc 208  Q
    | | | | |||||| |||||||    
T  2631685 gtctccacctccacacctcccc 2631706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 23657596 - 23657676
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaa 181  Q
    |||||||||||||  || |||||||||||||| ||| | || ||||||||||||||| || | |||||||||| |||||||    
T  23657596 atctgaaacattaacaagcaaagaaacatcaagcagaagagtcctacactcctctaacaactcctcctcccacgcccacaa 23657676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 47541125 - 47541182
Alignment:
Q  100 tatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaa 157  Q
    ||||||||||||| |||||||||  ||||||||  |||||||||||||||||| ||||    
T  47541125 tatctgaaacattcggaaacaaaagaacatcaagaagtaaagccctacactccgctaa 47541182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 187
Target Start/End: Complemental strand, 7663184 - 7663092
Alignment:
Q  95 ccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacg 187  Q
    |||| ||||||||||||| |||||||||  ||||||||  ||||||||| |||||||| |||| |  | ||||||||||  |||||| |||||    
T  7663184 ccatgtatctgaaacattcggaaacaaaagaacatcaagaagtaaagccatacactccactaacatctcctcctcccactgccacaatctacg 7663092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 8486934 - 8486871
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacact 150  Q
    ||||||| |||  |||||||||||||||||  ||| ||||||||||  ||||||||||||||||    
T  8486934 agccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacact 8486871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 23873429 - 23873343
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccac 173  Q
    ||||||| |||  ||||||||||| |||||  ||| ||||||||||  ||||||||||||||||| ||||  || | ||||||||||    
T  23873429 agccacacccagctatctgaaacaataggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccac 23873343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 43516627 - 43516565
Alignment:
Q  143 cctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactccacccctc 205  Q
    ||||||||||||||  | || |||||||||||||| ||||||||| ||| |||||||| ||||    
T  43516627 cctacactcctctagcatatcctcctcccacaccctcaacctacgccgccaactccacgcctc 43516565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 173
Target Start/End: Original strand, 55298807 - 55298893
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccac 173  Q
    ||||||| |||  ||||||||||| |||||  ||| ||||||||||  ||||||||||||||||| ||||  || | ||||||||||    
T  55298807 agccacacccagctatctgaaacaataggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccac 55298893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 20675209 - 20675330
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctac 186  Q
    ||||||| |||  |||||||||||||||||  ||| ||||||||||  ||||||| ||||||||| || |  || | ||||||||||  ||| |||||||    
T  20675209 agccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagtcctacactcatcaagcaactcctcctcccactgccataacctac 20675308  T
Q  187 ggcgcaaactccacccctcccc 208  Q
    | | | | |||||| |||||||    
T  20675309 gtctccacctccacacctcccc 20675330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 26694128 - 26694184
Alignment:
Q  100 tatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctcta 156  Q
    |||||||||||||||||| || ||| | |||||  ||||| ||||||||||||||||    
T  26694128 tatctgaaacattaggaaccagagagatatcaaatagtaacgccctacactcctcta 26694184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 86 - 215
Target Start/End: Original strand, 35488023 - 35488152
Alignment:
Q  86 tagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaaccta 185  Q
    |||||||  |||| |||||||||||||||||| |||||| | |||||  |||| |||| ||||||||||||  |||  |||||||||| |||||||||||    
T  35488023 tagccactcccatatatctgaaacattaggaaccaaagagatatcaaatagtagagccatacactcctctagcaaagcctcctcccacgcccacaaccta 35488122  T
Q  186 cggcgcaaactccacccctcccctccctgc 215  Q
    || ||| |||||||||||||||| ||||||    
T  35488123 cgccgccaactccacccctccccaccctgc 35488152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 64 - 219
Target Start/End: Original strand, 10597880 - 10598035
Alignment:
Q  64 aataaccccccatagggttaggtagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaatt 163  Q
    ||||||| || ||||||||||| ||||| |||||   |||||||| || || ||||| ||||||||||| || ||| | ||||||||||||||| | | |    
T  10597880 aataacctcctatagggttaggaagccaaatccaagaatctgaaatatcagtaaacagagaaacatcaagcaataatgtcctacactcctctaagacaat 10597979  T
Q  164 ctcctcccacacccacaacctacggcgcaaactccacccctcccctccctgcaaca 219  Q
    |||||||||| |||||||||| || | | |||||||||||||||| ||| ||||||    
T  10597980 ctcctcccacgcccacaacctccgcctccaactccacccctccccaccccgcaaca 10598035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 8066171 - 8066051
Alignment:
Q  95 ccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaa 194  Q
    |||| |||||||||||||||||| |||||| | |||||  ||||  ||||||||||||||||  | |  |||||||||| ||||||||||||| ||| ||    
T  8066171 ccatatatctgaaacattaggaaccaaagagatatcaaatagtagcgccctacactcctctagcatagcctcctcccacgcccacaacctacgccgccaa 8066072  T
Q  195 ctccacccctcccctccctgc 215  Q
    |||||||||||||| ||||||    
T  8066071 ctccacccctccccaccctgc 8066051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 9668971 - 9668838
Alignment:
Q  75 atagggttaggtagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccaca 174  Q
    ||||||| ||| ||||| |||||   |||||||| || || ||||| ||||||||||| |||||||| ||||||||||||||| | | |||||||||||     
T  9668971 atagggtcaggaagccaaatccaagaatctgaaatatcagtaaacagagaaacatcaagcagtaaagtcctacactcctctaagacaatctcctcccacg 9668872  T
Q  175 cccacaacctacggcgcaaactccacccctcccc 208  Q
    |||||| ||| || | | ||||||||||||||||    
T  9668871 cccacagcctccgcctccaactccacccctcccc 9668838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 87 - 184
Target Start/End: Original strand, 36804099 - 36804196
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacct 184  Q
    ||||||| |||| |||||||||||| ||| || | ||| |||||||  ||||||||||||||||||||||| || | |||||||||| ||||||||||    
T  36804099 agccacacccatctatctgaaacatgagggaaaacagagacatcaaatagtaaagccctacactcctctaacaagtcctcctcccacgcccacaacct 36804196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 28400489 - 28400382
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactccac 200  Q
    ||||||||||||||||| |||||| | |||||  ||||| |||||||||||||||| ||||  |||||||||  ||||||  ||||| | | ||||||||    
T  28400489 atctgaaacattaggaatcaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacagtctacgcctccaactccac 28400390  T
Q  201 ccctcccc 208  Q
    ||||||||    
T  28400389 ccctcccc 28400382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 206
Target Start/End: Original strand, 16213385 - 16213491
Alignment:
Q  100 tatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactcca 199  Q
    ||||| |||||||||||| |||||| | |||||  ||||| |||||||||||||||| |||| ||||||||||| |||| | |||||| | | |||||||    
T  16213385 tatctaaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaatctcctcccacgcccaaagcctacgcctccaactcca 16213484  T
Q  200 cccctcc 206  Q
     ||||||    
T  16213485 tccctcc 16213491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 173
Target Start/End: Original strand, 22052814 - 22052900
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccac 173  Q
    ||||||| |||  |||||||||||||||||  ||||||||||||||  ||||||||||||||||||||||  || | ||||||||||    
T  22052814 agccacacccagctatctgaaacattaggattcaaagaaacatcaagaagtaaagccctacactcctctagcaactcctcctcccac 22052900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 11234459 - 11234350
Alignment:
Q  45 tcataagtatctcgaactaaataaccccccatagggttaggtagccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccc 144  Q
    ||||||| | |||||||| ||||||| || ||||||| ||| |  || |||||   |||||||| ||||| ||||||||||||||||| |||||||| ||    
T  11234459 tcataagcacctcgaactgaataacctcctatagggtcaggaaaacaaatccaagaatctgaaatattagtaaacaaagaaacatcaagcagtaaagtcc 11234360  T
Q  145 tacactcctc 154  Q
    ||||||||||    
T  11234359 tacactcctc 11234350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 184
Target Start/End: Original strand, 36804314 - 36804411
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacct 184  Q
    ||||||| |||| |||||||||||| ||| || | ||| |||||||  ||||||||||||||||||||||| || | |||||||||| || |||||||    
T  36804314 agccacacccatctatctgaaacatgagggaaaacagagacatcaaatagtaaagccctacactcctctaacaagtcctcctcccacgcctacaacct 36804411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 15017877 - 15017957
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaa 181  Q
    |||||||||||||  || |||||||||||||| ||| | |||||||||||||||||| |  | ||||||||||||||||||    
T  15017877 atctgaaacattaacaagcaaagaaacatcaaacagaagagccctacactcctctaacatctcctcctcccacacccacaa 15017957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 31774871 - 31774936
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcc 152  Q
    ||||||| |||| ||||||||||||||||| |||||||||||||||  ||||| ||| ||||||||    
T  31774871 agccacacccatctatctgaaacattaggagacaaagaaacatcaagaagtaaggccttacactcc 31774936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 43627686 - 43627807
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctac 186  Q
    ||||||| |||  |||||||||||||||||  ||| ||||||||||  ||||||||||||||||| ||||  || | ||||||||||  ||| |||||||    
T  43627686 agccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctac 43627785  T
Q  187 ggcgcaaactccacccctcccc 208  Q
    | | | | |||||| |||||||    
T  43627786 gtctccacctccacacctcccc 43627807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 13550311 - 13550380
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctcta 156  Q
    ||||||| |||  |||||||||||||||||  ||||||||||||||  | ||||||||| ||||||||||    
T  13550311 agccacacccagctatctgaaacattaggatccaaagaaacatcaagaattaaagccctgcactcctcta 13550380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 33548059 - 33548180
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctac 186  Q
    ||||||| |||  ||||||||||| |||||  ||| ||||||||||  ||||||||||||||||| ||||  || | ||||||||||  ||| |||||||    
T  33548059 agccacacccagctatctgaaacaataggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctac 33548158  T
Q  187 ggcgcaaactccacccctcccc 208  Q
    | | | | |||||| |||||||    
T  33548159 gtctccacctccacacctcccc 33548180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 31085590 - 31085526
Alignment:
Q  87 agccacatccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactc 151  Q
    ||||||| |||  |||||||||||||||||  ||| ||||||||||  |||||||||||||||||    
T  31085590 agccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactc 31085526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 11028072 - 11028127
Alignment:
Q  102 tctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaa 157  Q
    ||||||||||||| | ||||||||||||||  || ||||| |||||||||||||||    
T  11028072 tctgaaacattagcatacaaagaaacatcacgcaataaagtcctacactcctctaa 11028127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 45421714 - 45421776
Alignment:
Q  95 ccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaa 157  Q
    |||| ||||||||||||| |||||||||  ||||||||  || ||||||||||||||| ||||    
T  45421714 ccatgtatctgaaacattcggaaacaaaagaacatcaagaagaaaagccctacactccgctaa 45421776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 5325960 - 5326016
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaa 157  Q
    |||||||||||||  || |||||||||||||| ||| | |||||| |||||||||||    
T  5325960 atctgaaacattaacaagcaaagaaacatcaaacagaagagccctgcactcctctaa 5326016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 95 - 209
Target Start/End: Complemental strand, 15595 - 15481
Alignment:
Q  95 ccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaa 194  Q
    ||||||||||||||| || |||| |||  |||||||||  ||||||||||||||||||||||| | || |||||||||| ||||||| || || ||| |     
T  15595 ccatttatctgaaacgtttggaaccaacaaaacatcaaatagtaaagccctacactcctctaacatatcctcctcccacgcccacaatctgcgacgccac 15496  T
Q  195 ctccacccctcccct 209  Q
    |||||||||||||||    
T  15495 ctccacccctcccct 15481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 364
Target Start/End: Complemental strand, 15438 - 15330
Alignment:
Q  256 gttttgttctcagctaagtcgaacaacctacgaaaccgctaactaaggggagaaccaccaatccatctatgcaaccaaaataatgtatcaaccccatctc 355  Q
    ||||||||||| || ||||| ||||| | ||||||||||  ||||||  |   |||||||||||| |||||  ||||||| || || ||| ||||||| |    
T  15438 gttttgttctctgccaagtcaaacaatcgacgaaaccgcacactaagcaggataccaccaatccacctatgtgaccaaaaaaaagtttcagccccatcac 15339  T
Q  356 ccaccttcc 364  Q
    |||||||||    
T  15338 ccaccttcc 15330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 42339 - 42446
Alignment:
Q  101 atctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacggcgcaaactccac 200  Q
    |||| |||||||||||| |||||| | |||||  | ||| |||||||||||||||| ||||  |||||||||  ||||||| ||||| | | ||||||||    
T  42339 atctaaaacattaggaaccaaagagatatcaaataataacgccctacactcctctagtaaaagctcctcccaagcccacaatctacgcctccaactccac 42438  T
Q  201 ccctcccc 208  Q
    | ||||||    
T  42439 ctctcccc 42446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 187
Target Start/End: Original strand, 7870 - 7962
Alignment:
Q  95 ccatttatctgaaacattaggaaacaaagaaacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacg 187  Q
    |||| ||||||||||||| |||||||||  ||||||||  ||||||||| |||||||| |||| |  | ||||||||||  |||||| |||||    
T  7870 ccatgtatctgaaacattcggaaacaaaagaacatcaagaagtaaagccatacactccactaacatctcctcctcccactgccacaatctacg 7962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 134769 - 134707
Alignment:
Q  125 aacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacg 187  Q
    ||||||||  |||||||||||||||||| |||| || | ||||||||||  ||||||||||||    
T  134769 aacatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacg 134707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 312596 - 312534
Alignment:
Q  125 aacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacg 187  Q
    ||||||||  |||||||||||||||||| |||| || | ||||||||||  ||||||||||||    
T  312596 aacatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacg 312534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 328050 - 327988
Alignment:
Q  125 aacatcaaccagtaaagccctacactcctctaataaattctcctcccacacccacaacctacg 187  Q
    ||||||||  |||||||||||||||||| |||| || | ||||||||||  ||||||||||||    
T  328050 aacatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacg 327988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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