View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14513_high_1 (Length: 565)
Name: NF14513_high_1
Description: NF14513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14513_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Complemental strand, 2177113 - 2176563
Alignment:
| Q |
1 |
atatcatatgaaaaattagaagcaaaattcaaagacacaaaggcaataacctacaaagatgaggtaggcaataaaaagatcatctctcccctaacaagaa |
100 |
Q |
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| T |
2177113 |
atatcatatgaaaaattagcagcaaaattcaaagacacaaaggcaataacctacaaagatgaggtaggcaataaaaagatcatatctcccctaacaagaa |
2177014 |
T |
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| Q |
101 |
agggagttaggaaaagtgttcgttttgcggattcagaacaagatgaaaaggatgagttgatgaaaggaagaagaagctgtggtagtaattatattgatga |
200 |
Q |
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| T |
2177013 |
aggcagttaggaaaagtgttcggtttgcggattcagaacaagatgaaaaggatgagttgatgaaaggaagaagaagctgtggtagtaattatattgatga |
2176914 |
T |
|
| Q |
201 |
attattaggagaaagagaaaggatgaatgttactagagtgaaggtgaagatgacaaaggaagaagcagctaagttactgtcaaaatttaaatgcaaagaa |
300 |
Q |
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| T |
2176913 |
attattaggagaaagagaaaggatgaatgttactagagtgaaggtaaagatgacaaaggaagaagcagctaagttactgtcaaaatttaaatgcaaagaa |
2176814 |
T |
|
| Q |
301 |
---ggagttcttccattcaaggatgttgcttctgagcttatagcactcccaatggaccgagttaccattctgtcaacttgaaccaacatatagcctctct |
397 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2176813 |
ggaggagttcttccattcaaggatgttgcttctgaacttatagcactcccaatggaccgagttaccattctgtcaacttgaaccaacatataacctctct |
2176714 |
T |
|
| Q |
398 |
agaatgaaatataagaaaaaatattcaaaaagtcaaatgtatttggttcgagacaccgtagaacacggtatgcagtgttagtgtgtttctgtgtgagtc- |
496 |
Q |
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| T |
2176713 |
agaatgaaatataagaaaaaatattcaaaaagtcaaatgtatttggttcgagacaccgtagaacacggtatccagtgttagtgtgtttccttgtgagtct |
2176614 |
T |
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| Q |
497 |
ttgggagttccaaaagtacttggactacactattgtatatattgtctacac |
547 |
Q |
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| T |
2176613 |
ttgggagtcccaaaagtacttggactacactattgtatatattgtctacac |
2176563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 31846124 - 31846152
Alignment:
| Q |
414 |
aaaaatattcaaaaagtcaaatgtatttg |
442 |
Q |
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| T |
31846124 |
aaaaatattcaaaaagtcaaatgtatttg |
31846152 |
T |
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