View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14513_high_3 (Length: 392)
Name: NF14513_high_3
Description: NF14513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14513_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 3 - 376
Target Start/End: Complemental strand, 3629584 - 3629211
Alignment:
| Q |
3 |
aatctattccaacaatggccaaactcaccaccacttcaaatttcctcaaatcacttcactctttctccttcctcagattcacttctcctttctcctttcc |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3629584 |
aatctattccaacaatggccaaactcaccaccacttcaaatttcctcaaatcacttcactctttctccttcctcagattcacttctcctttctcctttcc |
3629485 |
T |
|
| Q |
103 |
aggtacacactttacttagcatttccccttataaatcacaacactaacaaaaacactcagctatcatattcnnnnnnncaggtaaacatcattctcaaca |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3629484 |
aggtacacactttacttagcatttccccttataaatcacaacactaacaaaaacactcagctatcatattctttttttcaggtaaacatcattctcaaca |
3629385 |
T |
|
| Q |
203 |
cacgttggcaacagaactagcttcattaatcgaagaaccctcttcttcacccacccctaaacccgaaacccgtatgcaactcaaacgctttcttgagctc |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
3629384 |
cacgttggcaacagaactagcttcattaatcgaagaaccctcttcttcacccacccctaaacccgaaacccgtatgcaactcaaacggtttcttgaactc |
3629285 |
T |
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| Q |
303 |
cgaatcaaaaaacgggtcaaatctcaactcaacaacaacggcaagttccataacttaatccaaaccgttgtttc |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
3629284 |
cgaatcaaaaaacgggtcaaatctcaactcaacaacaacggcaagttccataacttagtccaaaccgtcgtttc |
3629211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 22513240 - 22513203
Alignment:
| Q |
27 |
tcaccaccacttcaaatttcctcaaatcacttcactct |
64 |
Q |
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||||||||||||||| ||||||||||| |||||||||| |
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| T |
22513240 |
tcaccaccacttcaagtttcctcaaataacttcactct |
22513203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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