View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14513_high_4 (Length: 308)
Name: NF14513_high_4
Description: NF14513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14513_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 33703946 - 33703670
Alignment:
| Q |
13 |
aacctgtgacattgcttgaggcgataaagttagcagctaacaacggctatcaattcgtccaatttgaaaccggcagcaaattcctagctgccgctgtgaa |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||| |
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| T |
33703946 |
aaccagtgacattgcttgaggcgataaagttagcagctaacaacggctatcaattcgtccaatttgaaaccgacagcaaaatcctagctgctgctgtgaa |
33703847 |
T |
|
| Q |
113 |
ctccagctgtgctcgtattaatgagtttggaattatagtctctcagtgtagagaccttttgattttaaataccgactttagagtgtactcgtttattcgg |
212 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
33703846 |
ctccagctgtgctcgtattaatgagtttggaatgatagtctcttagtgtagagaccttttgattttaaataccgactttagagtg---ttgtttattcgg |
33703750 |
T |
|
| Q |
213 |
agacaagctaatagagtcgttcgtagtatagctagagcttctctatcacacactagtccccacctattttatattgtatc |
292 |
Q |
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||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33703749 |
agacaagctaatagagtcgctcaaagtatagctagagcttctctatcacacactagcccccacctattttatattgtatc |
33703670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 163 - 290
Target Start/End: Complemental strand, 7829982 - 7829858
Alignment:
| Q |
163 |
gagaccttttgattttaaataccgactttagagtgtactcgtttattcggagacaagctaatagagtcgttcgtagtatagctagagcttctctatcaca |
262 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| | |||||| | || |||||||||| ||| | || |||||||| ||||||||| |||||||| |
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| T |
7829982 |
gagaccttttgattttaaataccgattttagagtgt---cttttatttgaaggcaagctaatacagttgctcatagtatagttagagcttccctatcaca |
7829886 |
T |
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| Q |
263 |
cactagtccccacctattttatattgta |
290 |
Q |
| |
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|||||| ||||| ||||||||||||||| |
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| T |
7829885 |
cactagcccccatctattttatattgta |
7829858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 7830252 - 7830175
Alignment:
| Q |
22 |
cattgcttgaggcgataaagttagcagctaacaacggctatcaattcgtccaatttgaaaccggcagcaaattcctag |
99 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| |||||| |
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| T |
7830252 |
cattgcttgaggtgataaagttagcagcaaacaacggctatcaatttgtccaatttgaaaccgacagcaaaatcctag |
7830175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 290
Target Start/End: Original strand, 28037633 - 28037741
Alignment:
| Q |
179 |
aaataccgactttagagtgtactcgtttattcggagacaagctaatagagtcgttcgtagtatagctagagcttctctatcacacactagtccccaccta |
278 |
Q |
| |
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|||||||||||||| ||||| ||| |||| |||| |||| |||||| || | || ||||||||||||||||||| |||| || |||| ||||| || |
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| T |
28037633 |
aaataccgactttaaagtgt---cgtatattaggaggcaagttaatagggttgctcatagtatagctagagcttctttatctcatcctagcccccatctt |
28037729 |
T |
|
| Q |
279 |
ttttatattgta |
290 |
Q |
| |
|
||||||| |||| |
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|
| T |
28037730 |
ttttatagtgta |
28037741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 264
Target Start/End: Original strand, 34692287 - 34692527
Alignment:
| Q |
21 |
acattgcttgaggcgataaagttagcagctaacaacggctatcaattcgtccaatttgaaaccggcagcaaattcctagctgccgctgtgaactccagct |
120 |
Q |
| |
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||||| || |||||||| ||||||||||| |||||| ||| | |||| |||||||| |||||| ||| ||| |||||| || ||||||||||| || | |
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| T |
34692287 |
acattcctagaggcgatcaagttagcagcaaacaacagctcttaatttgtccaattcaaaaccgacagaaaaatcctagttgaggctgtgaactctagtt |
34692386 |
T |
|
| Q |
121 |
gtgctcgtattaatgagtttggaattatagtctctcagtgtagagaccttttgattttaaataccgactttagagtgtactcgtttattcggagacaagc |
220 |
Q |
| |
|
|||||| ||| |||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34692387 |
gtgctcatatcaatgagtttggagacatcgtctctcaatgtagagaccttttgattttaaataccgactttagagt---atcgtttattcggagacaaat |
34692483 |
T |
|
| Q |
221 |
taatagagtcgttcgtagtatagctagagcttctctatcacaca |
264 |
Q |
| |
|
|||||| |||| || ||||| || |||||| || |||||||||| |
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| T |
34692484 |
taatagggtcgctcatagtagaggtagagcatccctatcacaca |
34692527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 5185573 - 5185502
Alignment:
| Q |
179 |
aaataccgactttagagtgtactcgtttattcggagacaagctaatagagtcgttcgtagtatagctagagcttc |
253 |
Q |
| |
|
|||||||||||||| ||||| ||| |||| |||||||||||||||| || | || |||||||||||||||||| |
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| T |
5185573 |
aaataccgactttaaagtgt---cgtatattaggagacaagctaatagggttgctcatagtatagctagagcttc |
5185502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 28795989 - 28796145
Alignment:
| Q |
22 |
cattgcttgaggcgataaagttagcagctaacaacggctatcaattcgtccaatttgaaaccggcagcaaattcctagctgccgctgtgaactccagctg |
121 |
Q |
| |
|
||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| | ||||||| || |||| ||||||||||| | ||| |
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| T |
28795989 |
cattgcttgaggcgataaatttagtagcaaacaacggctatcaattcgtccaatttgaaactgacagcaaa---ataactgctgctgtgaactctacctg |
28796085 |
T |
|
| Q |
122 |
tgctcgtattaatgagtttggaattatagtctctcagtgtagagaccttttgattttaaat |
182 |
Q |
| |
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||||| |||||||||||||||| |||||||||||||||||| | ||||||||||||||| |
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| T |
28796086 |
tgctcatattaatgagtttggagacatagtctctcagtgtaga-aacttttgattttaaat |
28796145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 36757030 - 36756969
Alignment:
| Q |
201 |
tcgtttattcggagacaagctaatagagtcgttcgtagtatagctagagcttctctatcaca |
262 |
Q |
| |
|
|||||||||||||| |||||||||| ||| | || |||||| ||||||||||| ||||||| |
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|
| T |
36757030 |
tcgtttattcggaggcaagctaataaagttgctcatagtattgctagagcttccttatcaca |
36756969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 648504 - 648599
Alignment:
| Q |
179 |
aaataccgactttagagtgtactcgtttattcggagacaagctaatagagtcgttcgtagtatagctagagcttctctatcacacactagtccccacct |
277 |
Q |
| |
|
|||| ||||||||||||||| ||| ||| |||| ||||| |||||||| | || ||| ||||||||||||||| ||||||| |||| |||||||| |
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| T |
648504 |
aaatcccgactttagagtgt---cgtatataaggaggcaagcaaatagagtggctcatagcatagctagagcttctttatcacaacctagcccccacct |
648599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 290
Target Start/End: Complemental strand, 10813238 - 10813130
Alignment:
| Q |
179 |
aaataccgactttagagtgtactcgtttattcggagacaagctaatagagtcgttcgtagtatagctagagcttctctatcacacactagtccccaccta |
278 |
Q |
| |
|
|||||||||||||| ||||| | | ||||||||| ||||||||||| || | || |||||||||||||||||| |||| || |||| ||||| || |
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|
| T |
10813238 |
aaataccgactttaaagtgt---catatattcggaggcaagctaatagggttgctcatagtatagctagagcttccttatctcatcctagcccccatctt |
10813142 |
T |
|
| Q |
279 |
ttttatattgta |
290 |
Q |
| |
|
||||||| |||| |
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|
| T |
10813141 |
ttttatagtgta |
10813130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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