View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14513_high_5 (Length: 308)
Name: NF14513_high_5
Description: NF14513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14513_high_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 7 - 308
Target Start/End: Complemental strand, 8927128 - 8926827
Alignment:
| Q |
7 |
tatacattaaattgttacctcaagttggtcaccaaggttgatgacaatagagtgaggcattggagggacatcaatccattggtcatctttgagaagctga |
106 |
Q |
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| T |
8927128 |
tatacattaaattgttacctcaagttggtcaccaaggttgatgacaatagagtgaggcattggagggacatcaatccattggtcatctttgagaagctga |
8927029 |
T |
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| Q |
107 |
agtccactgactttgtcatcttggaagagaaggatgatgccaccagcatctgtgtgcgctctaagtcccttgatgagatcaggcttaggacaaggagggt |
206 |
Q |
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| T |
8927028 |
agtccactgactttgtcatcttggaagagaaggatgatgccaccagcatctgtgtgtgctctaagtcccttgatgagatcaggcttaggacaaggagggt |
8926929 |
T |
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| Q |
207 |
agttactaacttttgtaccaaaatttggaccctttgatccataaaacactttcttcaagtactctttctcaagttcaagattctcacacaataagtcaag |
306 |
Q |
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| T |
8926928 |
agttactaacttttgtaccaaaatttggaccctttgatccataaaacactttcttcaagtaccctttctcaagtccaagattctcacacaataagtcaag |
8926829 |
T |
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| Q |
307 |
aa |
308 |
Q |
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| T |
8926828 |
aa |
8926827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 22 - 233
Target Start/End: Complemental strand, 55528202 - 55527991
Alignment:
| Q |
22 |
tacctcaagttggtcaccaaggttgatgacaatagagtgaggcattggagggacatcaatccattggtcatctttgagaagctgaagtccactgactttg |
121 |
Q |
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| T |
55528202 |
tacctcaatttggtcaccaaggttgataacaatggaatggcgcattggtgggacatcaatccattggccatctttaaggagctgaagtccgccaaccttg |
55528103 |
T |
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| Q |
122 |
tcatcttggaagagaaggatgatgccaccagcatctgtgtgcgctctaagtcccttgatgagatcaggcttaggacaaggagggtagttactaacttttg |
221 |
Q |
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| T |
55528102 |
tcatcttggaagagtaaaattatgccaccagcatctgtatgggctctgagtcctttgataagatctggcttaggacaaggagggtagttgctaactttgg |
55528003 |
T |
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| Q |
222 |
taccaaaatttg |
233 |
Q |
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| T |
55528002 |
ttccaaaatttg |
55527991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 308
Target Start/End: Complemental strand, 55523724 - 55523640
Alignment:
| Q |
224 |
ccaaaatttggaccctttgatccataaaacactttcttcaagtactctttctcaagttcaagattctcacacaataagtcaagaa |
308 |
Q |
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| T |
55523724 |
ccaaaatttggtcccttggatccatgaaagactttcttcaaataacctttctctagcccaagattctcacacagaaagtcaagaa |
55523640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 37629658 - 37629517
Alignment:
| Q |
21 |
ttacctcaagttggtcaccaaggttgatgacaatagagtgaggcattggagggacatcaatccattggtcatctttgagaagctgaagtccactgacttt |
120 |
Q |
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| T |
37629658 |
ttacctcaagttggtcaccaaggttgatgacaatggaatgatgcatgggagggacatctacccagttaccatctttgagaagctgaaggccactgacctt |
37629559 |
T |
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| Q |
121 |
gtcatcttggaagagaaggatgatgccaccagcatctgtgtg |
162 |
Q |
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| T |
37629558 |
gtcatcttggaaaagaaggatgattccaccggcatcggtgtg |
37629517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 162
Target Start/End: Original strand, 36871889 - 36872030
Alignment:
| Q |
21 |
ttacctcaagttggtcaccaaggttgatgacaatagagtgaggcattggagggacatcaatccattggtcatctttgagaagctgaagtccactgacttt |
120 |
Q |
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| T |
36871889 |
ttacctcaagttggtcaccaaggttgacaacgatggagtggcgcattgggggaacatcaacccactggccatctttgagcaattgtaggccactgacctt |
36871988 |
T |
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| Q |
121 |
gtcatcttggaagagaaggatgatgccaccagcatctgtgtg |
162 |
Q |
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| T |
36871989 |
atcatcctggaagagaaggatgattcctccggcatcggtgtg |
36872030 |
T |
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